Locus TA07189

Locus

ID TA07189 genomic context (Gviz / IGV.js)
genomic context
Family dinQ/AgrB
Organism Escherichia coli str. K-12 substr. MG1655
Taxonomy Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli str. K-12 substr. MG1655
Genomic location chromosome
Genomic coordinates 3647652-3648377
Genome accession (GenBank) NC_000913.3
Genome map CGView
Genomic context IGV.js
Upstream gene gor : glutathione reductase (NADPH)
Within-locus gene agrA : small RNA AgrA
agrB : small regulatory RNA AgrB
dinQ : membrane toxin DinQ
Downstream gene arsR : DNA-binding transcriptional repressor ArsR

Toxin mRNA

Name dinQ predicted 2D structure (mfold / VARNA)
mRNA structure
Locus_tag NA
Genomic coordinates 3647652-3647982 (strand -)
Length 331 nt
Sequence
(with 50 nt upstream, and -10 box in red; mRNA/asRNA interaction region underlined; toxin ORF in blue; transcript sequence in UPPERCASE)
ttgcaaggacgtgctggttttataacctgcatgtactgtatgattatcca
GTTAGCTCTGAGGCATTTTCACTCTGGCAATGCGCATAAACGCTTTCAAA
GTCCTGGTCAGAAGTACGGGTGGTGCCGTTAACTGATGCTCTGGCCGGAG
TGAGAGAGTTCTTATCTAACAATGAGACATGCGCCGTGACAGGCAGTGGA
TGAGTAAGCGGATGCATTCTCACTCCATCGCATGGAGAAAACGGGTGATT
GATAAAGCAATCATCGTTCTAGGGGCGTTAATTGCGCTGCTGGAACTGAT
CCGCTTTCTGCTTCAGCTTCTGAACTGATAGCGGAAACGTAATTAAGGGC
TAAGAGCACACTACTCTTAGCCCTTTAACAT
→ BLAST sequence
Predicted 2D structure PDF, PNG

Antitoxin asRNA

Name agrB predicted 2D structure (mfold / VARNA)
sRNA structure
Locus_tag NA
Genomic coordinates 3648294-3648377 (strand +)
Length 84 nt
Sequence
(with 50 nt upstream, and -10 box in red; mRNA/asRNA interaction region underlined; transcript sequence in UPPERCASE)
gaaatcgctaattcttgcaatgttagccactggctaatagtattgagctg
TTAGATAAGAACTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTGGA
AAGTAAAAAACCGACGCAAAGTCGGTTTTTTTAC
→ BLAST sequence
Predicted 2D structure PDF, PNG

Toxin Peptide

Name dinQ predicted 2D structure (PSIPRED / POLYVIEW-2D)
peptide structurepeptide structure legend

hydrophobicity plot (ProtScale)
peptide hydrophobicity
Locus_tag NA
ORF genomic coordinates 3647702-3647788 (strand -)
ORF length (peptide length) 87 nt (28 aa)
ORF sequence
GTGATTGATAAAGCAATCATCGTTCTAGGGGCGTTAATTGCGCTGCTGGA
ACTGATCCGCTTTCTGCTTCAGCTTCTGAACTGATAG
→ BLAST sequence
Peptide sequence
VIDKAIIVLGALIALLELIRFLLQLLN**
→ BLAST sequence
Predicted 2D structure PDF, GIF
Hydrophobicity plot PDF, GIF