Locus TA07183

Locus

ID TA07183 genomic context (Gviz / IGV.js)
genomic context
Family ShoB/OhsC
Organism Escherichia coli str. K-12 substr. MG1655
Taxonomy Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli str. K-12 substr. MG1655
Genomic location chromosome
Genomic coordinates 2700090-2700599
Genome accession (GenBank) NC_000913.3
Genome map CGView
Genomic context IGV.js
Upstream gene yfhL : putative 4Fe-4S cluster-containing protein YfhL
Within-locus gene ohsC : small regulatory RNA OhsC
shoB : toxic peptide ShoB
Downstream gene acpS : holo-[acyl-carrier-protein] synthase

Toxin mRNA

Name shoB predicted 2D structure (mfold / VARNA)
mRNA structure
Locus_tag NA
Genomic coordinates 2700090-2700376 (strand -)
Length 287 nt
Sequence
(with 50 nt upstream, and -10 box in red; mRNA/asRNA interaction region underlined; toxin ORF in blue; transcript sequence in UPPERCASE)
tggaaagattaacgtgaccgccaattcgtaagtacattaaaattggcttc
GTTATTGAAGATTTTGCTGTGCTTTACACCATGCCACAGAATTCCCCCAT
TGAAACGAGTGGTGTCGTCAAAGCTCTGGTGTGGAGTGCAGCATGCACCC
TCAATAACTCGCACGTTCAGTTTTGGGGAGATGTAAGGGCTAATCTGAAT
GGCTGCATTCCTTGTTTAAGGAAAAACGAATGACTGATTGCCGATACCTG
ATTAAACGGGTCATCAAAATCATCATTGCTGTTTTACAGCTGATCCTTCT
GTTCTTATAACACAAGGAAACGTACTTAAGGTGCGTC
→ BLAST sequence
Predicted 2D structure PDF, PNG

Antitoxin asRNA

Name ohsC predicted 2D structure (mfold / VARNA)
sRNA structure
Locus_tag NA
Genomic coordinates 2700523-2700599 (strand +)
Length 77 nt
Sequence
(with 50 nt upstream; mRNA/asRNA interaction region underlined; transcript sequence in UPPERCASE)
tgcaagttgcttgtaaaagataagtacactgatccataatcgctgttgtt
GAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCC
TTACCAGTTCGGGGGTTTTACTTTTTA
→ BLAST sequence
Predicted 2D structure PDF, PNG

Toxin Peptide

Name shoB predicted 2D structure (PSIPRED / POLYVIEW-2D)
peptide structurepeptide structure legend

hydrophobicity plot (ProtScale)
peptide hydrophobicity
Locus_tag NA
ORF genomic coordinates 2700117-2700197 (strand -)
ORF length (peptide length) 81 nt (26 aa)
ORF sequence
ATGACTGATTGCCGATACCTGATTAAACGGGTCATCAAAATCATCATTGC
TGTTTTACAGCTGATCCTTCTGTTCTTATAA
→ BLAST sequence
Peptide sequence
MTDCRYLIKRVIKIIIAVLQLILLFL*
→ BLAST sequence
Predicted 2D structure PDF, GIF
Hydrophobicity plot PDF, GIF