Locus TA07166

Locus

ID TA07166 genomic context (Gviz / IGV.js)
genomic context
Family ibs/sib
Organism Escherichia coli str. K-12 substr. MG1655
Taxonomy Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli str. K-12 substr. MG1655
Genomic location chromosome
Genomic coordinates 3195084-3195247
Genome accession (GenBank) NC_000913.3
Genome map CGView
Genomic context IGV.js
Upstream gene ibsD : putative toxic peptide IbsD
Within-locus gene ibsE : toxic peptide IbsE
sibE : small RNA SibE
Downstream gene hldE : fused heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase

Toxin mRNA

Name ibsE predicted 2D structure (mfold / VARNA)
mRNA structure
Locus_tag NA
Genomic coordinates 3195084-3195238 (strand +)
Length 155 nt
Sequence
(with 50 nt upstream; mRNA/asRNA interaction region underlined; toxin ORF in blue; transcript sequence in UPPERCASE)
gggaaagcattgcgcggggtccggcgctcatcaacaatcggggggcagca
AGGGGCTGAAACGGGAAAGCCCCTCCCGAAGAAGGGGCCTTGTATAAGGA
AAGGGTTATGATGAAGCTCGTCATCATACTGGTTGTGTTGTTACTGTTAA
GTTTCCCGACTTACTAACAACTCATCAGAGGGGGGAGAAATCCTCCCTTA
CCCTT
→ BLAST sequence
Predicted 2D structure PDF, PNG

Antitoxin asRNA

Name sibE predicted 2D structure (mfold / VARNA)
sRNA structure
Locus_tag NA
Genomic coordinates 3195098-3195247 (strand -)
Length 150 nt
Sequence
(with 50 nt upstream; mRNA/asRNA interaction region underlined; transcript sequence in UPPERCASE)
cgcttcgtacatggcaggcctattgacgctgttgttttttcaacctagag
TAAAGGAACAAGGGTAAGGGAGGATTTCTCCCCCCTCTGATGAGTTGTTA
GTAAGTCGGGAAACTTAACAGTAACAACACAACCAGTATGATGACGAGCT
TCATCATAACCCTTTCCTTATACAAGGCCCCTTCTTCGGGAGGGGCTTTC
→ BLAST sequence
Predicted 2D structure PDF, PNG

Toxin Peptide

Name ibsE predicted 2D structure (PSIPRED / POLYVIEW-2D)
peptide structurepeptide structure legend

hydrophobicity plot (ProtScale)
peptide hydrophobicity
Locus_tag NA
ORF genomic coordinates 3195141-3195200 (strand +)
ORF length (peptide length) 60 nt (19 aa)
ORF sequence
ATGATGAAGCTCGTCATCATACTGGTTGTGTTGTTACTGTTAAGTTTCCC
GACTTACTAA
→ BLAST sequence
Peptide sequence
MMKLVIILVVLLLLSFPTY*
→ BLAST sequence
Predicted 2D structure PDF, GIF
Hydrophobicity plot PDF, GIF