Locus TA07165
Locus
| ID | TA07165 |
genomic context (Gviz / IGV.js)
|
| Family | ibs/sib | |
| Organism | Escherichia coli str. K-12 substr. MG1655 | |
| Taxonomy | Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli str. K-12 substr. MG1655 | |
| Genomic location | chromosome | |
| Genomic coordinates | 3194710-3194872 | |
| Genome accession (GenBank) | NC_000913.3 | |
| Genome map | CGView | |
| Genomic context | IGV.js | |
| Upstream gene | yqiK : flotillin family inner membrane protein YqiK | |
| Within-locus gene |
ibsD : putative toxic peptide IbsD sibD : small RNA SibD |
|
| Downstream gene | sibE : small RNA SibE |
Toxin mRNA
| Name | ibsD |
predicted 2D structure (mfold / VARNA)
|
| Locus_tag | NA | |
| Genomic coordinates | 3194710-3194871 (strand +) | |
| Length | 162 nt | |
| Sequence (with 50 nt upstream; mRNA/asRNA interaction region underlined; toxin ORF in blue; transcript sequence in UPPERCASE) |
aaagcattgcgtggggtctggcgctcatcaacaatcggggagtcagcagg
→ BLAST sequence
GGGCTGAAACGGGAAAGCCCCTCCCGAAGAAGGGGGCCTTACAGAAGGAA AGGGTTATGATGAAGCTCGTCATCATACTGATTGTGTTGTTACTCGTAAG TTTCGCAGCTTATTAACAGCCAATCAGAGGGGGGAGAAATCCTCCCTCAC CCTTGTTCCTTT |
|
| Predicted 2D structure | PDF, PNG |
Antitoxin asRNA
| Name | sibD |
predicted 2D structure (mfold / VARNA)
|
| Locus_tag | NA | |
| Genomic coordinates | 3194723-3194872 (strand -) | |
| Length | 150 nt | |
| Sequence (with 50 nt upstream; mRNA/asRNA interaction region underlined; transcript sequence in UPPERCASE) |
gatatgtgttaatgaaaccttcttgacgctgattttttttcaacctaaag
→ BLAST sequence
TAAAGGAACAAGGGTGAGGGAGGATTTCTCCCCCCTCTGATTGGCTGTTA ATAAGCTGCGAAACTTACGAGTAACAACACAATCAGTATGATGACGAGCT TCATCATAACCCTTTCCTTCTGTAAGGCCCCCTTCTTCGGGAGGGGCTTT |
|
| Predicted 2D structure | PDF, PNG |
Toxin Peptide
| Name | ibsD |
predicted 2D structure (PSIPRED / POLYVIEW-2D)
 
hydrophobicity plot (ProtScale) 
|
| Locus_tag | NA | |
| ORF genomic coordinates | 3194769-3194825 (strand +) | |
| ORF length (peptide length) | 57 nt (18 aa) | |
| ORF sequence |
ATGAAGCTCGTCATCATACTGATTGTGTTGTTACTCGTAAGTTTCGCAGC
→ BLAST sequence
TTATTAA |
|
| Peptide sequence |
MKLVIILIVLLLVSFAAY*
→ BLAST sequence
|
|
| Predicted 2D structure | PDF, GIF | |
| Hydrophobicity plot | PDF, GIF |
