Locus TA07164

Locus

ID TA07164 genomic context (Gviz / IGV.js)
genomic context
Family ibs/sib
Organism Escherichia coli str. K-12 substr. MG1655
Taxonomy Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli str. K-12 substr. MG1655
Genomic location chromosome
Genomic coordinates 3056844-3057010
Genome accession (GenBank) NC_000913.3
Genome map CGView
Genomic context IGV.js
Upstream gene fau : putative 5-formyltetrahydrofolate cyclo-ligase
Within-locus gene ibsC : toxic peptide IbsC
sibC : small regulatory RNA antitoxin SibC
Downstream gene serA : phosphoglycerate dehydrogenase

Toxin mRNA

Name ibsC predicted 2D structure (mfold / VARNA)
mRNA structure
Locus_tag NA
Genomic coordinates 3056851-3057010 (strand -)
Length 160 nt
Sequence
(with 50 nt upstream, and -10 box in red; mRNA/asRNA interaction region underlined; toxin ORF in blue; transcript sequence in UPPERCASE)
aaagtcagatcaatgcgttgtgtttatttaatggggatttacgatggcag
GGCAGCATGGGGCTGTAACGGTAAAGCCCTCACCGAAGCGAGGGCTTGAA
GGAGAAGGGTTATGATGCGACTTGTCATCATACTGATTGTACTGTTACTC
ATAAGTTTCAGCGCTTATTAACAGTCAGTCTCAGGGGAGGAGCAATCCTC
CCTTACCCTT
→ BLAST sequence
Predicted 2D structure PDF, PNG

Antitoxin asRNA

Name sibC predicted 2D structure (mfold / VARNA)
sRNA structure
Locus_tag NA
Genomic coordinates 3056844-3056988 (strand +)
Length 145 nt
Sequence
(with 50 nt upstream; mRNA/asRNA interaction region underlined; transcript sequence in UPPERCASE)
gatacacccgcatcgccctgattgacatcgttgattctttgacctaattt
AGTGAGTAAGGGTAAGGGAGGATTGCTCCTCCCCTGAGACTGACTGTTAA
TAAGCGCTGAAACTTATGAGTAACAGTACAATCAGTATGATGACAAGTCG
CATCATAACCCTTCTCCTTCAAGCCCTCGCTTCGGTGAGGGCTTT
→ BLAST sequence
Predicted 2D structure PDF, PNG

Toxin Peptide

Name ibsC predicted 2D structure (PSIPRED / POLYVIEW-2D)
peptide structurepeptide structure legend

hydrophobicity plot (ProtScale)
peptide hydrophobicity
Locus_tag NA
ORF genomic coordinates 3056890-3056946 (strand -)
ORF length (peptide length) 57 nt (18 aa)
ORF sequence
ATGCGACTTGTCATCATACTGATTGTACTGTTACTCATAAGTTTCAGCGC
TTATTAA
→ BLAST sequence
Peptide sequence
MRLVIILIVLLLISFSAY*
→ BLAST sequence
Predicted 2D structure PDF, GIF
Hydrophobicity plot PDF, GIF