Locus TA07163

Locus

ID TA07163 genomic context (Gviz / IGV.js)
genomic context
Family ibs/sib
Organism Escherichia coli str. K-12 substr. MG1655
Taxonomy Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli str. K-12 substr. MG1655
Genomic location chromosome
Genomic coordinates 2153637-2153806
Genome accession (GenBank) NC_000913.3
Genome map CGView
Genomic context IGV.js
Upstream gene ibsA : toxic peptide IbsA
Within-locus gene ibsB : putative toxic peptide IbsB
sibB : small RNA SibB
Downstream gene mdtA : multidrug efflux pump membrane fusion protein MdtA

Toxin mRNA

Name ibsB predicted 2D structure (mfold / VARNA)
mRNA structure
Locus_tag NA
Genomic coordinates 2153640-2153806 (strand -)
Length 167 nt
Sequence
(with 50 nt upstream; mRNA/asRNA interaction region underlined; toxin ORF in blue; transcript sequence in UPPERCASE)
tatctacgcgttagcgatagactgcttgcatggcgaaaggaggtaagccg
ACGATTTCAGCGGGACGCTGAAACGGGAAAGCCCCTCCCGAGGAAGGGGC
CATAAATAAGGAAAGGGTCATGATGAAGCTACTCATCATCGTGGTGCTCT
TAGTCATAAGCTTCCCCGCTTACTAAGACTACCAGGGCGGGGGAAACCCC
GCTCTACCCTCACTCCT
→ BLAST sequence
Predicted 2D structure PDF, PNG

Antitoxin asRNA

Name sibB predicted 2D structure (mfold / VARNA)
sRNA structure
Locus_tag NA
Genomic coordinates 2153637-2153803 (strand +)
Length 167 nt
Sequence
(with 50 nt upstream, and -10 box in red; mRNA/asRNA interaction region underlined; transcript sequence in UPPERCASE)
tcgcagactacaaagcctgcggattgacaatcttatcgtgaaggcatact
TTCAGGAGTGAGGGTAGAGCGGGGTTTCCCCCGCCCTGGTAGTCTTAGTA
AGCGGGGAAGCTTATGACTAAGAGCACCACGATGATGAGTAGCTTCATCA
TGACCCTTTCCTTATTTATGGCCCCTTCCTCGGGAGGGGCTTTCCCGTTT
CAGCGTCCCGCTGAAAT
→ BLAST sequence
Predicted 2D structure PDF, PNG

Toxin Peptide

Name ibsB predicted 2D structure (PSIPRED / POLYVIEW-2D)
peptide structurepeptide structure legend

hydrophobicity plot (ProtScale)
peptide hydrophobicity
Locus_tag NA
ORF genomic coordinates 2153681-2153737 (strand -)
ORF length (peptide length) 57 nt (18 aa)
ORF sequence
ATGATGAAGCTACTCATCATCGTGGTGCTCTTAGTCATAAGCTTCCCCGC
TTACTAA
→ BLAST sequence
Peptide sequence
MMKLLIIVVLLVISFPAY*
→ BLAST sequence
Predicted 2D structure PDF, GIF
Hydrophobicity plot PDF, GIF