Locus TA07162

Locus

ID TA07162 genomic context (Gviz / IGV.js)
genomic context
Family ibs/sib
Organism Escherichia coli str. K-12 substr. MG1655
Taxonomy Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli str. K-12 substr. MG1655
Genomic location chromosome
Genomic coordinates 2153303-2153454
Genome accession (GenBank) NC_000913.3
Genome map CGView
Genomic context IGV.js
Upstream gene yegL : IPR002035 domain-containing protein YegL
Within-locus gene ibsA : toxic peptide IbsA
sibA : small RNA SibA
Downstream gene sibB : small RNA SibB

Toxin mRNA

Name ibsA predicted 2D structure (mfold / VARNA)
mRNA structure
Locus_tag NA
Genomic coordinates 2153305-2153454 (strand -)
Length 150 nt
Sequence
(with 50 nt upstream; mRNA/asRNA interaction region underlined; toxin ORF in blue; transcript sequence in UPPERCASE)
cattcagggcgaaaggaggtaagccgatgatttcagcgggacgctgaaac
GGGAAAGCCTCTCCCGGAGAAGAGGGCTTTTAATAAGGAAAGGGTTATGA
TGAAGCACGTCATCATACTGGTGATACTCTTAGTGATTAGCTTCCAGGCT
TACTAAGAACACCAGGGGGAGGGGGAAACCTCTCCCTAACCCTCACTCCT
→ BLAST sequence
Predicted 2D structure PDF, PNG

Antitoxin asRNA

Name sibA predicted 2D structure (mfold / VARNA)
sRNA structure
Locus_tag NA
Genomic coordinates 2153303-2153451 (strand +)
Length 149 nt
Sequence
(with 50 nt upstream; mRNA/asRNA interaction region underlined; transcript sequence in UPPERCASE)
cgcaagaacggagagccgtcgattgacactaagggcggagtgacataatt
TCAGGAGTGAGGGTTAGGGAGAGGTTTCCCCCTCCCCCTGGTGTTCTTAG
TAAGCCTGGAAGCTAATCACTAAGAGTATCACCAGTATGATGACGTGCTT
CATCATAACCCTTTCCTTATTAAAAGCCCTCTTCTCCGGGAGAGGCTTT
→ BLAST sequence
Predicted 2D structure PDF, PNG

Toxin Peptide

Name ibsA predicted 2D structure (PSIPRED / POLYVIEW-2D)
peptide structurepeptide structure legend

hydrophobicity plot (ProtScale)
peptide hydrophobicity
Locus_tag NA
ORF genomic coordinates 2153349-2153405 (strand -)
ORF length (peptide length) 57 nt (18 aa)
ORF sequence
ATGAAGCACGTCATCATACTGGTGATACTCTTAGTGATTAGCTTCCAGGC
TTACTAA
→ BLAST sequence
Peptide sequence
MKHVIILVILLVISFQAY*
→ BLAST sequence
Predicted 2D structure PDF, GIF
Hydrophobicity plot PDF, GIF