Locus TA07145

Locus

ID TA07145 genomic context (Gviz / IGV.js)
genomic context
Family TimP/TimR
Organism Escherichia coli str. K-12 substr. MG1655
Taxonomy Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli str. K-12 substr. MG1655
Genomic location chromosome
Genomic coordinates 2653356-2654158
Genome accession (GenBank) NC_000913.3
Genome map CGView
Genomic context IGV.js
Upstream gene sseA : 3-mercaptopyruvate sulfurtransferase
Within-locus gene ryfA : small regulatory RNA RyfA
timP : putative toxic protein TimP
timR : putative small regulatory RNA TimR
Downstream gene sseB : protein SseB

Toxin mRNA

Name TimP predicted 2D structure (mfold / VARNA)
mRNA structure
Locus_tag NA
Genomic coordinates 2653857-2654158 (strand +)
Length 302 nt
Sequence
(with 50 nt upstream, and -10 box in red; mRNA/asRNA interaction region underlined; toxin ORF in blue; transcript sequence in UPPERCASE)
tgtcaagcaaaagagagttattattgttctgttagtgtattatccactgc
GGCCCTTTCCGCCGTCTCGCAAACGGGCGCTGGCTTTAGGAAAGGATGTT
CCGTGGCCGTAAATGCAGGTGTTTCACAGCGCTTGCTATCGCGGCAATAT
CGCCAGTGGTGCTGTCGTGATGCGGTCTTCGCATGGACCGCACAATGAAG
ATACGGTGCTTTTGTATCGTACTTATTGTTTCTGGTGCGCTGTTAACCGA
GGTAAATAATAACCGGAGTCTCTCCGGCGACAATTTACTGGTGGTTAACA
ACCTTCAGAGCAGCAAGTAAGCCCGAATGCCGCCCTTTGGGCGGCATATT
TT
→ BLAST sequence
Predicted 2D structure PDF, PNG

Antitoxin asRNA

Name TimR predicted 2D structure (mfold / VARNA)
sRNA structure
Locus_tag NA
Genomic coordinates 2653356-2653455 (strand -)
Length 100 nt
Sequence
(with 50 nt upstream; mRNA/asRNA interaction region underlined; transcript sequence in UPPERCASE)
attactctcttttgcttgacaaaaagagagttactggtgagtattgtttt
GCTGTGAAGCACCTGCGTTGCTCATGTAACACAAGTCAACCTGCTGGAAA
GGCCGCGAACCAGACTAGCAATAAAAAACCGCCAAATTCGGCGGTTTTTT
→ BLAST sequence
Predicted 2D structure PDF, PNG

Toxin Peptide

Name TimP predicted 2D structure (PSIPRED / POLYVIEW-2D)
peptide structurepeptide structure legend

hydrophobicity plot (ProtScale)
peptide hydrophobicity
Locus_tag NA
ORF genomic coordinates 2654001-2654126 (strand +)
ORF length (peptide length) 126 nt (41 aa)
ORF sequence
ATGAAGATACGGTGCTTTTGTATCGTACTTATTGTTTCTGGTGCGCTGTT
AACCGAGGTAAATAATAACCGGAGTCTCTCCGGCGACAATTTACTGGTGG
TTAACAACCTTCAGAGCAGCAAGTAA
→ BLAST sequence
Peptide sequence
MKIRCFCIVLIVSGALLTEVNNNRSLSGDNLLVVNNLQSSK*
→ BLAST sequence
Predicted 2D structure PDF, GIF
Hydrophobicity plot PDF, GIF