Locus TA07144

Locus

ID TA07144 genomic context (Gviz / IGV.js)
genomic context
Family TimP/TimR
Organism Salmonella enterica enterica serovar Typhimurium str. SL1344
Taxonomy Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella; Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344
Genomic location chromosome
Genomic coordinates 2672473-2672945
Genome accession (GenBank) NC_016810.1
Genome map CGView
Genomic context IGV.js
Upstream gene SL1344_RS12990 : DUF5066 family protein
Within-locus gene timP : small toxic inner membrane protein TimP
Downstream gene sseB : enhanced serine sensitivity protein SseB

Toxin mRNA

Name TimP predicted 2D structure (mfold / VARNA)
mRNA structure
Locus_tag NA
Genomic coordinates 2672651-2672945 (strand +)
Length 295 nt
Sequence
(with 50 nt upstream, and -10 box in red; mRNA/asRNA interaction region underlined; toxin ORF in blue; transcript sequence in UPPERCASE)
caatatgatttaccgggaaactattcaatatttgaggtattatctttccc
GGCCCTTTCCGCCGTCTCGCAAACGGGCGCTGGCTTCAGGAGAGGATAAC
CCATGGCCGTAAGCGCAGGCACACCGTAGTGCCTGCTATCACGGCATTAT
CGCCAGCGGTGCTGCCGTGATGCGGTCTTCGCAAGGACCGCAACATGAAG
GTACGATGCTTTTGTGTCGTGCTTCTTGTTTCTGGCACGTTGTGTCTTCA
CGCAGACAGAAGCTACCCAGGTAATTCTGTTCCCGTAACGCTCAACGTCC
AGAGCAGGTAAGCCAGGAGGCCGCCCTGTTGGGCGGCTTTCTTTT
→ BLAST sequence
Predicted 2D structure PDF, PNG

Antitoxin asRNA

Name TimR predicted 2D structure (mfold / VARNA)
sRNA structure
Locus_tag NA
Genomic coordinates 2672473-2672567 (strand -)
Length 95 nt
Sequence
(with 50 nt upstream, and -10 box in red; mRNA/asRNA interaction region underlined; transcript sequence in UPPERCASE)
cccggtaaatcatattgacatttgctcccttaaaagggagtattaatccc
CTACGGTGTGCCTGCGTTGCTATGGCAACAAAGCCTGCTGGAAAGGCCGC
GAACCGGACCAGCACAAAAAAACCGCTCAATTGAGCGGTTTTTTT
→ BLAST sequence
Predicted 2D structure PDF, PNG

Toxin Peptide

Name TimP predicted 2D structure (PSIPRED / POLYVIEW-2D)
peptide structurepeptide structure legend

hydrophobicity plot (ProtScale)
peptide hydrophobicity
Locus_tag NA
ORF genomic coordinates 2672795-2672911 (strand +)
ORF length (peptide length) 117 nt (38 aa)
ORF sequence
ATGAAGGTACGATGCTTTTGTGTCGTGCTTCTTGTTTCTGGCACGTTGTG
TCTTCACGCAGACAGAAGCTACCCAGGTAATTCTGTTCCCGTAACGCTCA
ACGTCCAGAGCAGGTAA
→ BLAST sequence
Peptide sequence
MKVRCFCVVLLVSGTLCLHADRSYPGNSVPVTLNVQSR*
→ BLAST sequence
Predicted 2D structure PDF, GIF
Hydrophobicity plot PDF, GIF