Locus TA07134

Locus

ID TA07134 genomic context (Gviz / IGV.js)
genomic context
Family CD/RCd
Organism Clostridioides difficile 630
Taxonomy Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Clostridioides; Clostridioides difficile 630
Genomic location chromosome
Genomic coordinates 3397842-3398099
Genome accession (GenBank) NC_009089.1
Genome map CGView
Genomic context IGV.js
Upstream gene
Downstream gene CD630_RS19840 : hypothetical protein

Toxin mRNA

Name CD2907.2 predicted 2D structure (mfold / VARNA)
mRNA structure
Locus_tag NA
Genomic coordinates 3397842-3398099 (strand -)
Length 258 nt
Sequence
(with 50 nt upstream, and -10 box in red; mRNA/asRNA interaction region underlined; toxin ORF in blue; transcript sequence in UPPERCASE)
tatataaaaaaaatggaaaaatatgtaataattatatgttataataattg
TAGCAAGGATAATAATCGAAAGTGCGAAGGGTGATTATTTTCATATTAAA
CGCCAAATTCCAAATAAGGAAGGAGGTGAAATTATATGATAGGTTTTTTA
TTAAGCATACTAGCTGGTGTTATATCAGCTTATATTTATGACAAAATAAA
AAATCACCCAGACGCCAATAAGGGTGATTTAAAAAAATAATTCTTTAAAT
CAATTTTGATGGAAATAGCTACTCTTGTATAAAGTAAATTATTTCCTTGC
TTTTATTA
→ BLAST sequence
Predicted 2D structure PDF, PNG

Antitoxin asRNA

Name RCd15 predicted 2D structure (mfold / VARNA)
sRNA structure
Locus_tag NA
Genomic coordinates 3397852-3397957 (strand +)
Length 106 nt
Sequence
(with 50 nt upstream, and -10 box in red; transcript sequence in UPPERCASE)
taaaaatattatttttgaatatctgtaccaatttgtggtataataaaagc
AAGGAAATAATTTACTTTATACAAGAGTAGCTATTTCCATCAAAATTGAT
TTAAAGAATTATTTTTTTAAATCACCCTTATTGGCGTCTGGGTGATTTTT
TATTTT
→ BLAST sequence
Predicted 2D structure PDF, PNG

Toxin Peptide

Name CD2907.2 predicted 2D structure (PSIPRED / POLYVIEW-2D)
peptide structurepeptide structure legend

hydrophobicity plot (ProtScale)
peptide hydrophobicity
Locus_tag NA
ORF genomic coordinates 3397910-3398014 (strand -)
ORF length (peptide length) 105 nt (34 aa)
ORF sequence
ATGATAGGTTTTTTATTAAGCATACTAGCTGGTGTTATATCAGCTTATAT
TTATGACAAAATAAAAAATCACCCAGACGCCAATAAGGGTGATTTAAAAA
AATAA
→ BLAST sequence
Peptide sequence
MIGFLLSILAGVISAYIYDKIKNHPDANKGDLKK*
→ BLAST sequence
Predicted 2D structure PDF, GIF
Hydrophobicity plot PDF, GIF