Locus TA07132

Locus

ID TA07132 genomic context (Gviz / IGV.js)
genomic context
Family CD/RCd
Organism Clostridioides difficile 630
Taxonomy Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Clostridioides; Clostridioides difficile 630
Genomic location chromosome
Genomic coordinates 1089476-1089736
Genome accession (GenBank) NC_009089.1
Genome map CGView
Genomic context IGV.js
Upstream gene CD630_RS05105 : site-specific integrase
Downstream gene CD630_RS05110 : DUF4041 domain-containing protein

Toxin mRNA

Name CD0904.1 predicted 2D structure (mfold / VARNA)
mRNA structure
Locus_tag NA
Genomic coordinates 1089476-1089736 (strand +)
Length 261 nt
Sequence
(with 50 nt upstream, and -10 box in red; mRNA/asRNA interaction region underlined; toxin ORF in blue; transcript sequence in UPPERCASE)
aaaagtaatatataggtaaaatatgtaagaattatatgatataataattg
TAGCAAGGAAAATAAAATTGAAAAGCTAAGGGTGATTTTCTCGTATAAAC
GCCAAATTCCAATATAGGAAGGAGGTGAATTTATATGTTAATTAACTTTT
TATTGAGTATAGTAGCTGGAATTGTGTCAGCTTACATTTACGAGAAAATA
AAAAATCACCCAAACGCCAATAAGGGTGATTTAAAGAAATAACTTTTAAA
TTCTAATCAATTAGAGAAATTCACCTTTTACAAAGTAAATTTTATCTCCT
TGCTATTATTA
→ BLAST sequence
Predicted 2D structure PDF, PNG

Antitoxin asRNA

Name RCd13 predicted 2D structure (mfold / VARNA)
sRNA structure
Locus_tag NA
Genomic coordinates 1089620-1089726 (strand -)
Length 107 nt
Sequence
(with 50 nt upstream, and -10 box in red; transcript sequence in UPPERCASE)
ataaaatattatttttgaatatctgtacaaatttgtgatataataatagc
AAGGAGATAAAATTTACTTTGTAAAAGGTGAATTTCTCTAATTGATTAGA
ATTTAAAAGTTATTTCTTTAAATCACCCTTATTGGCGTTTGGGTGATTTT
TTATTTT
→ BLAST sequence
Predicted 2D structure PDF, PNG

Toxin Peptide

Name CD0904.1 predicted 2D structure (PSIPRED / POLYVIEW-2D)
peptide structurepeptide structure legend

hydrophobicity plot (ProtScale)
peptide hydrophobicity
Locus_tag NA
ORF genomic coordinates 1089560-1089667 (strand +)
ORF length (peptide length) 108 nt (35 aa)
ORF sequence
ATGTTAATTAACTTTTTATTGAGTATAGTAGCTGGAATTGTGTCAGCTTA
CATTTACGAGAAAATAAAAAATCACCCAAACGCCAATAAGGGTGATTTAA
AGAAATAA
→ BLAST sequence
Peptide sequence
MLINFLLSIVAGIVSAYIYEKIKNHPNANKGDLKK*
→ BLAST sequence
Predicted 2D structure PDF, GIF
Hydrophobicity plot PDF, GIF