Locus TA07131

Locus

ID TA07131 genomic context (Gviz / IGV.js)
genomic context
Family CD/RCd
Organism Clostridioides difficile 630
Taxonomy Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Clostridioides; Clostridioides difficile 630
Genomic location chromosome
Genomic coordinates 3380206-3380505
Genome accession (GenBank) NC_009089.1
Genome map CGView
Genomic context IGV.js
Upstream gene CD630_RS15415 : ATP-binding cassette domain-containing protein
Within-locus gene CD630_RS19835 : hypothetical protein
Downstream gene CD630_RS15420 : hypothetical protein

Toxin mRNA

Name CD2889 predicted 2D structure (mfold / VARNA)
mRNA structure
Locus_tag NA
Genomic coordinates 3380223-3380505 (strand -)
Length 283 nt
Sequence
(with 50 nt upstream, and -10 box in red; mRNA/asRNA interaction region underlined; toxin ORF in blue; transcript sequence in UPPERCASE)
aaatggagaatagatatttgataattgtaaaattatgttataattaaaat
GCAAGAATAATCTTGTGGAACTACAATCTAAGAGTGGAGCTTCATTTTCT
ACATTCCATCCCTTAAAAGGAAGGAGGTGGAGAAATGAGCGAATTTTTAC
TAGGAGTGTTAGCTAGTTTAACAGCTAGCTTTATTACATATATTATTTCC
AGAAAAGTAAAAAGCCACTCTGGCAGGAGTGACTTTGAGCTTGATGTAAA
AATCAAGTTTAATAAAAAACGACATTAATATTTAGTTAATGAAACTTCAC
TCTAGGCTAATAGATTGTAGTTTCTTTTTTTGT
→ BLAST sequence
Predicted 2D structure PDF, PNG

Antitoxin asRNA

Name RCd12 predicted 2D structure (mfold / VARNA)
sRNA structure
Locus_tag NA
Genomic coordinates 3380206-3380352 (strand +)
Length 147 nt
Sequence
(with 50 nt upstream, and -10 box in red; mRNA/asRNA interaction region underlined; transcript sequence in UPPERCASE)
ttctaatattcatagttttattttttctcaaaatgcgatataataaagat
GTAAATTCGTATCAAAAACAAAAAAAGAAACTACAATCTATTAGCCTAGA
GTGAAGTTTCATTAACTAAATATTAATGTCGTTTTTTATTAAACTTGATT
TTTACATCAAGCTCAAAGTCACTCCTGCCAGAGTGGCTTTTTACTTT
→ BLAST sequence
Predicted 2D structure PDF, PNG

Toxin Peptide

Name CD2889 predicted 2D structure (PSIPRED / POLYVIEW-2D)
peptide structurepeptide structure legend

hydrophobicity plot (ProtScale)
peptide hydrophobicity
Locus_tag NA
ORF genomic coordinates 3380278-3380421 (strand -)
ORF length (peptide length) 144 nt (47 aa)
ORF sequence
ATGAGCGAATTTTTACTAGGAGTGTTAGCTAGTTTAACAGCTAGCTTTAT
TACATATATTATTTCCAGAAAAGTAAAAAGCCACTCTGGCAGGAGTGACT
TTGAGCTTGATGTAAAAATCAAGTTTAATAAAAAACGACATTAA
→ BLAST sequence
Peptide sequence
MSEFLLGVLASLTASFITYIISRKVKSHSGRSDFELDVKIKFNKKRH*
→ BLAST sequence
Predicted 2D structure PDF, GIF
Hydrophobicity plot PDF, GIF