Locus TA07130

Locus

ID TA07130 genomic context (Gviz / IGV.js)
genomic context
Family CD/RCd
Organism Clostridioides difficile 630
Taxonomy Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Clostridioides; Clostridioides difficile 630
Genomic location chromosome
Genomic coordinates 1142137-1142439
Genome accession (GenBank) NC_009089.1
Genome map CGView
Genomic context IGV.js
Upstream gene CD630_RS05485 : hypothetical protein
Within-locus gene CD630_RS19700 : hypothetical protein
Downstream gene CD630_RS05490 : BlaI/MecI/CopY family transcriptional regulator

Toxin mRNA

Name CD0977.1 predicted 2D structure (mfold / VARNA)
mRNA structure
Locus_tag NA
Genomic coordinates 1142137-1142418 (strand +)
Length 282 nt
Sequence
(with 50 nt upstream, and -10 box in red; mRNA/asRNA interaction region underlined; toxin ORF in blue; transcript sequence in UPPERCASE)
atatgaagaatagatatttgataattgtaaaattatgttataattaaaat
GCAAGAATATATCTTGTAAGAAACTACAATCCAAGAGTGGAGCTTCATTT
TCTACATTCCATCCCTTAAAAGGAAGGAGGTGGAGAAATGAGCGAATTTT
TACTAGGAGTGTTAGCTAGTTTAACAGCTAGCTTTATTACATATATTATT
TCCAGAAAAGTAAAAAGCCACTCTGGCAGGAGTGACTTTGAGCTTGATGT
GAAAATCAAGCTTAATAAAAAACAACATTAATATTTAGTTAATGAAACTT
CACTCTAGGCTAATAGATTGTAGTTTCTTTTT
→ BLAST sequence
Predicted 2D structure PDF, PNG

Antitoxin asRNA

Name RCd11 predicted 2D structure (mfold / VARNA)
sRNA structure
Locus_tag NA
Genomic coordinates 1142289-1142439 (strand -)
Length 151 nt
Sequence
(with 50 nt upstream, and -10 box in red; mRNA/asRNA interaction region underlined; transcript sequence in UPPERCASE)
ttctaatattcatagttttattttttctcaaaatgcgatataataaagat
GTAAATTCGTATCAAAAACAAAAAAAGAAACTACAATCTATTAGCCTAGA
GTGAAGTTTCATTAACTAAATATTAATGTTGTTTTTTATTAAGCTTGATT
TTCACATCAAGCTCAAAGTCACTCCTGCCAGAGTGGCTTTTTACTTTTCT
G
→ BLAST sequence
Predicted 2D structure PDF, PNG

Toxin Peptide

Name CD0977.1 predicted 2D structure (PSIPRED / POLYVIEW-2D)
peptide structurepeptide structure legend

hydrophobicity plot (ProtScale)
peptide hydrophobicity
Locus_tag NA
ORF genomic coordinates 1142224-1142367 (strand +)
ORF length (peptide length) 144 nt (47 aa)
ORF sequence
ATGAGCGAATTTTTACTAGGAGTGTTAGCTAGTTTAACAGCTAGCTTTAT
TACATATATTATTTCCAGAAAAGTAAAAAGCCACTCTGGCAGGAGTGACT
TTGAGCTTGATGTGAAAATCAAGCTTAATAAAAAACAACATTAA
→ BLAST sequence
Peptide sequence
MSEFLLGVLASLTASFITYIISRKVKSHSGRSDFELDVKIKLNKKQH*
→ BLAST sequence
Predicted 2D structure PDF, GIF
Hydrophobicity plot PDF, GIF