Locus TA07129

Locus

ID TA07129 genomic context (Gviz / IGV.js)
genomic context
Family Hok/Sok
Organism Hafnia alvei
Taxonomy Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Hafniaceae; Hafnia; Hafnia alvei
Genomic location chromosome
Genomic coordinates 2471-2877
Genome accession (GenBank) X03774.1
Genome map CGView
Genomic context IGV.js
Upstream gene CAA27400.1 : lysine decarboxylase (aa 1-739)
Downstream gene CAA27400.1 : lysine decarboxylase (aa 1-739)

Toxin mRNA

Name hokH predicted 2D structure (mfold / VARNA)
mRNA structure
Locus_tag NA
Genomic coordinates 2471-2877 (strand -)
Length 407 nt
Sequence
(with 50 nt upstream, and -10 box in red; mRNA/asRNA interaction region underlined; toxin ORF in blue; transcript sequence in UPPERCASE)
aacggcaatagacgcgcgatagctaagcattgtttggatagaatcacggc
GGGTGCTTGAGGCTTTTTGCCTTGAGCATGAAATATGTGGTGAGGCAGAA
AGTAAAAGCCCCAGGTCAACTTACATTAACCTGAGGCAATCCTAACCACA
TCTGAACAATGTGAGGATAGCCTCTTCAATGCAGCAATGCAATTGGAGGC
TTTGATGTCGCGTAAGCTGTTGCTTTACGGATTAATAGTGATGTGTTTTA
CGCTATTGATCTTTACCTGGATGGTACGTGGTTCGCTGTGTGAGCTACGA
ATTAAGCAGGGAAAAACAGAGGTTGCCGCGTTCTTAAACTACGAAGATAA
GCACGCGTTGTAACGGCAATATGTAACGGCAAAATCAGACTGGGATGGCG
CCTAACCTTCCCAGTCTTCTCAAATTGTTTTCATGCATGGTTGGCTCTCA
GGCACCC
→ BLAST sequence
Predicted 2D structure PDF, PNG

Antitoxin asRNA

Name sokH predicted 2D structure (mfold / VARNA)
sRNA structure
Locus_tag NA
Genomic coordinates 2771-2828 (strand +)
Length 58 nt
Sequence
(with 50 nt upstream, and -10 box in red; transcript sequence in UPPERCASE)
catcaaagcctccaattgcattgctgcattgaagaggctatcctcacatt
GTTCAGATGTGGTTAGGATTGCCTCAGGTTAATGTAAGTTGACCTGGGGC
TTTTACTT
→ BLAST sequence
Predicted 2D structure PDF, PNG

Toxin Peptide

Name hokH predicted 2D structure (PSIPRED / POLYVIEW-2D)
peptide structurepeptide structure legend

hydrophobicity plot (ProtScale)
peptide hydrophobicity
Locus_tag NA
ORF genomic coordinates 2565-2723 (strand -)
ORF length (peptide length) 159 nt (52 aa)
ORF sequence
ATGTCGCGTAAGCTGTTGCTTTACGGATTAATAGTGATGTGTTTTACGCT
ATTGATCTTTACCTGGATGGTACGTGGTTCGCTGTGTGAGCTACGAATTA
AGCAGGGAAAAACAGAGGTTGCCGCGTTCTTAAACTACGAAGATAAGCAC
GCGTTGTAA
→ BLAST sequence
Peptide sequence
MSRKLLLYGLIVMCFTLLIFTWMVRGSLCELRIKQGKTEVAAFLNYEDKH
AL*
→ BLAST sequence
Predicted 2D structure PDF, GIF
Hydrophobicity plot PDF, GIF