Locus TA07128
Locus
| ID | TA07128 |
genomic context (Gviz / IGV.js)
|
| Family | Hok/Sok | |
| Organism | Escherichia coli ECOR24 ECOR24_contig_19_consensus | |
| Taxonomy | Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli | |
| Genomic location | chromosome | |
| Genomic coordinates | 131308-131671 | |
| Genome accession (GenBank) | NZ_LYAM01000110.1 | |
| Genome map | CGView | |
| Genomic context | IGV.js | |
| Upstream gene | nhaA : Na+/H+ antiporter NhaA | |
| Within-locus gene |
mokC : hokC leader ORF (Pedersen and Gerdes 1999) mokC : type I toxin-antitoxin system toxin MokC |
|
| Downstream gene | dnaJ : molecular chaperone DnaJ |
Toxin mRNA
| Name | hokC |
predicted 2D structure (mfold / VARNA)
|
| Locus_tag | NA | |
| Genomic coordinates | 131308-131671 (strand +) | |
| Length | 364 nt | |
| Sequence (with 50 nt upstream, and -10 box in red; mRNA/asRNA interaction region underlined; toxin ORF in blue; leader ORF in white background; transcript sequence in UPPERCASE) |
attagaatcgataaaacaaaatgggttaaagagagcgatataatagcggc
→ BLAST sequence
GGGTGCTTGAGGCTGTCTGTCTCAGGCATTAGCTGAACGGCAGATAGAGA AAAGCCCCGAGTGATATTTTACCATCAACCCGAGGCCCCCTATATGCTGA ACACATGTAGAGTGCCTCTTACTGACCGTAAGGTCAAGGAGAAGAGAGCA ATGAAGCAGCATAAGGCGATGATTGTCGCCCTGATCGTCATCTGTATCAC CGCCGTAGTGGCGGCGCTGGTAACGAGAAAAGACCTCTGTGAGGTTCACA TCCGAACTGGCCAGACGGAGGTTGCTGTTTTCACGGCTTACGAATCCGAG TAAGAGCAACGGCGGGGAGTGATCCCCGCCACTTTACAGGTGCTCGCATA TCTTCAACGCACCC |
|
| Predicted 2D structure | PDF, PNG |
Antitoxin asRNA
| Name | sokC |
predicted 2D structure (mfold / VARNA)
|
| Locus_tag | NA | |
| Genomic coordinates | 131352-131409 (strand -) | |
| Length | 58 nt | |
| Sequence (with 50 nt upstream; transcript sequence in UPPERCASE) |
attgctctcttctccttgaccttacggtcagtaagaggcactctacatgt
→ BLAST sequence
GTTCAGCATATAGGGGGCCTCGGGTTGATGGTAAAATATCACTCGGGGCT TTTCTCTA |
|
| Predicted 2D structure | PDF, PNG |
Toxin Peptide
| Name | hokC |
predicted 2D structure (PSIPRED / POLYVIEW-2D)
 
hydrophobicity plot (ProtScale) 
|
| Locus_tag | NA | |
| ORF genomic coordinates | 131458-131610 (strand +) | |
| ORF length (peptide length) | 153 nt (50 aa) | |
| ORF sequence |
ATGAAGCAGCATAAGGCGATGATTGTCGCCCTGATCGTCATCTGTATCAC
→ BLAST sequence
CGCCGTAGTGGCGGCGCTGGTAACGAGAAAAGACCTCTGTGAGGTTCACA TCCGAACTGGCCAGACGGAGGTTGCTGTTTTCACGGCTTACGAATCCGAG TAA |
|
| Peptide sequence |
MKQHKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVFTAYESE
→ BLAST sequence
* |
|
| Predicted 2D structure | PDF, GIF | |
| Hydrophobicity plot | PDF, GIF |
