Locus TA07127

Locus

ID TA07127 genomic context (Gviz / IGV.js)
genomic context
Family Hok/Sok
Organism Escherichia coli strain B; ATCC 11303
Taxonomy Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli
Genomic location chromosome
Genomic coordinates 4733-5047
Genome accession (GenBank) M23008.1
Genome map CGView
Genomic context IGV.js
Upstream gene cysH : 3'-phosphoadenosine-5'-phosphosulfate sulfotransferase
Downstream gene cysH : 3'-phosphoadenosine-5'-phosphosulfate sulfotransferase

Toxin mRNA

Name hokX predicted 2D structure (mfold / VARNA)
mRNA structure
Locus_tag NA
Genomic coordinates 4733-5047 (strand +)
Length 315 nt
Sequence
(with 50 nt upstream, and -10 box in red; mRNA/asRNA interaction region underlined; toxin ORF in blue; transcript sequence in UPPERCASE)
attttaaacgtgaacgccgctggaagaattatcaggtatagaatggcgtc
GGGTGCTTGAGGCTGTCTGGCGTTAAGCATTCGCGAGGTTCCAGATCCAC
AAAAGCCCCAGGCGATATTTCTATCAACCTAGGCTTACGTTCGAACCCAA
ACAATTCGAATGTTAGTCTCTTCTTTGCAGGGAGGCAAGACATGCTGACA
AAATATGCCCTTGTGGCAATATAGTGCTGTGTTTTACAGTACTGGGATTC
ACGCTGCATGGTAGGCCACTCGTTGTGTGAGTTGAGTATCAGAGAACGTG
GTATGGAGTTTAAGGCAGTTCTCGCTTACGAATCGAAGAAGTAGCCCACC
ACGCGGGGTAAAACC
→ BLAST sequence
Predicted 2D structure PDF, PNG

Antitoxin asRNA

Name sokX predicted 2D structure (mfold / VARNA)
sRNA structure
Locus_tag NA
Genomic coordinates 4778-4834 (strand -)
Length 57 nt
Sequence
(with 50 nt upstream, and -10 box in red; transcript sequence in UPPERCASE)
tttgtcagcatgtcttgcctccctgcaaagaagagactaacattcgaatt
GTTTGGGTTCGAACGTAAGCCTAGGTTGATAGAAATATCGCCTGGGGCTT
TTGTGGA
→ BLAST sequence
Predicted 2D structure PDF, PNG

Toxin Peptide

Name hokX predicted 2D structure (PSIPRED / POLYVIEW-2D)
peptide structurepeptide structure legend

hydrophobicity plot (ProtScale)
peptide hydrophobicity
Locus_tag NA
ORF genomic coordinates 4874-5026 (strand +)
ORF length (peptide length) 153 nt (50 aa)
ORF sequence
ATGCTGACAAAATATGCCCTTGTGGCAATATAGTGCTGTGTTTTACAGTA
CTGGGATTCACGCTGCATGGTAGGCCACTCGTTGTGTGAGTTGAGTATCA
GAGAACGTGGTATGGAGTTTAAGGCAGTTCTCGCTTACGAATCGAAGAAG
TAG
→ BLAST sequence
Peptide sequence
MLTKYALVAI*CCVLQYWDSRCMVGHSLCELSIRERGMEFKAVLAYESKK
*
→ BLAST sequence
Predicted 2D structure PDF, GIF
Hydrophobicity plot PDF, GIF