Locus TA07123

Locus

ID TA07123 genomic context (Gviz / IGV.js)
genomic context
Family Hok/Sok
Organism Escherichia coli plasmid R1 minimal parB+ region.
Taxonomy Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli
Genomic location plasmid R1 minimal parB+ region.
Genomic coordinates 131-526
Genome accession (GenBank) X05813.1
Genome map CGView
Genomic context IGV.js
Upstream gene CAA29258.1 : sok gene product (AA 1 - 74)
Within-locus gene CAA29259.1 : hok gene product (AA 1 - 52)
mok : hok leader ORF (Pedersen and Gerdes 1999)
Downstream gene CAA29258.1 : sok gene product (AA 1 - 74)

Toxin mRNA

Name hok predicted 2D structure (mfold / VARNA)
mRNA structure
Locus_tag NA
Genomic coordinates 131-526 (strand +)
Length 396 nt
Sequence
(with 50 nt upstream, and -10 box in red; mRNA/asRNA interaction region underlined; toxin ORF in blue; leader ORF in white background; transcript sequence in UPPERCASE)
agggaaagtgagtgtggtcagcgtgcaggtatatgggctatgatgtgccc
GGCGCTTGAGGCTTTCTGCCTCATGACGTGAAGGTGGTTTGTTGCCGTGT
TGTGTGGCAGAAAGAAGATAGCCCCGTAGTAAGTTAATTTTCATTAACCA
CCACGAGGCATCCCTATGTCTAGTCCACATCAGGATAGCCTCTTACCGCG
CTTTGCGCAAGGAGAAGAAGGCCATGAAACTACCACGAAGTTCCCTTGTC
TGGTGTGTGTTGATCGTGTGTCTCACACTGTTGATATTCACTTATCTGAC
ACGAAAATCGCTGTGCGAGATTCGTTACAGAGACGGACACAGGGAGGTGG
CGGCTTTCATGGCTTACGAATCCGGTAAGTAGCAACCTGGAGGCGGGCGC
AGGCCCGCCTTTTCAGGACTGATGCTGGTCTGACTACTGAAGCGCC
→ BLAST sequence
Predicted 2D structure PDF, PNG

Antitoxin asRNA

Name sok predicted 2D structure (mfold / VARNA)
sRNA structure
Locus_tag NA
Genomic coordinates 192-255 (strand -)
Length 64 nt
Sequence
(with 50 nt upstream, and -10 box in red; transcript sequence in UPPERCASE)
atggccttcttctccttgcgcaaagcgcggtaagaggctatcctgatgtg
GACTAGACATAGGGATGCCTCGTGGTGGTTAATGAAAATTAACTTACTAC
GGGGCTATCTTCTT
→ BLAST sequence
Predicted 2D structure PDF, PNG

Toxin Peptide

Name hok predicted 2D structure (PSIPRED / POLYVIEW-2D)
peptide structurepeptide structure legend

hydrophobicity plot (ProtScale)
peptide hydrophobicity
Locus_tag NA
ORF genomic coordinates 304-462 (strand +)
ORF length (peptide length) 159 nt (52 aa)
ORF sequence
ATGAAACTACCACGAAGTTCCCTTGTCTGGTGTGTGTTGATCGTGTGTCT
CACACTGTTGATATTCACTTATCTGACACGAAAATCGCTGTGCGAGATTC
GTTACAGAGACGGACACAGGGAGGTGGCGGCTTTCATGGCTTACGAATCC
GGTAAGTAG
→ BLAST sequence
Peptide sequence
MKLPRSSLVWCVLIVCLTLLIFTYLTRKSLCEIRYRDGHREVAAFMAYES
GK*
→ BLAST sequence
Predicted 2D structure PDF, GIF
Hydrophobicity plot PDF, GIF