Locus TA07117

Locus

ID TA07117 genomic context (Gviz / IGV.js)
genomic context
Family sprA2/sprA2as
Organism Staphylococcus aureus aureus str. Newman DNA
Taxonomy Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; Staphylococcus; Staphylococcus aureus subsp. aureus str. Newman
Genomic location chromosome
Genomic coordinates 2560365-2560601
Genome accession (GenBank) NC_009641.1
Genome map CGView
Genomic context IGV.js
Upstream gene NWMN_RS13405 : ABC transporter ATP-binding protein
Within-locus gene NWMN_RS13415 : type I toxin-antitoxin system Fst family toxin
Downstream gene gtxA : flippase GtxA

Toxin mRNA

Name sprA2 predicted 2D structure (mfold / VARNA)
mRNA structure
Locus_tag NA
Genomic coordinates 2560389-2560601 (strand -)
Length 213 nt
Sequence
(with 50 nt upstream, and -10 box in red; mRNA/asRNA interaction region underlined; toxin ORF in blue; transcript sequence in UPPERCASE)
taagccttaatattgcgtgaaatataataaataaatgatataatatgatg
GTCGCCTAACATCTCGGGCGTTACTTTAACGCAGAGAGGAGGTGTATGAC
GGATGTTCAATTTATTAATTAACATCATGACTTCAGCTATAAGCGGCTGT
CTTGTTGCGTTTTTTGCACATTGGTTACGAACGCGCAACAATAAAAAAGG
TGACAAATAACCAACACCTAAATAAATCCCCTCACTATGGCAGTAGTGAG
GGGATTTGGTGTA
→ BLAST sequence
Predicted 2D structure PDF, PNG

Antitoxin asRNA

Name sprA2as predicted 2D structure (mfold / VARNA)
sRNA structure
Locus_tag NA
Genomic coordinates 2560365-2560425 (strand +)
Length 61 nt
Sequence
(with 50 nt upstream, and -10 box in red; mRNA/asRNA interaction region underlined; transcript sequence in UPPERCASE)
aatattgcaaaaatacattgcacaccttgttcatcaatgctataattaat
TACATAATAAATTGAACATCTAAATACACCAAATCCCCTCACTACTGCCA
TAGTGAGGGGA
→ BLAST sequence
Predicted 2D structure PDF, PNG

Toxin Peptide

Name sprA2 predicted 2D structure (PSIPRED / POLYVIEW-2D)
peptide structurepeptide structure legend

hydrophobicity plot (ProtScale)
peptide hydrophobicity
Locus_tag NA
ORF genomic coordinates 2560442-2560549 (strand -)
ORF length (peptide length) 108 nt (35 aa)
ORF sequence
ATGTTCAATTTATTAATTAACATCATGACTTCAGCTATAAGCGGCTGTCT
TGTTGCGTTTTTTGCACATTGGTTACGAACGCGCAACAATAAAAAAGGTG
ACAAATAA
→ BLAST sequence
Peptide sequence
MFNLLINIMTSAISGCLVAFFAHWLRTRNNKKGDK*
→ BLAST sequence
Predicted 2D structure PDF, GIF
Hydrophobicity plot PDF, GIF