Locus TA06429
Locus
| ID | TA06429 |
genomic context (Gviz / IGV.js)
|
| Family | TisB/IstR1 | |
| Organism | Escherichia coli BW2952 | |
| Taxonomy | Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli BW2952 | |
| Genomic location | chromosome | |
| Genomic coordinates | 3739471-3740085 | |
| Genome accession (GenBank) | NC_012759.1 | |
| Genome map | CGView | |
| Genomic context | IGV.js | |
| Upstream gene | ivbL : ilvB operon leader peptide IvbL | |
| Within-locus gene | tisB : type I toxin-antitoxin system toxin TisB | |
| Downstream gene | ysdE : protein YsdE |
Toxin mRNA
| Name | TisB |
predicted 2D structure (mfold / VARNA)
|
| Locus_tag | NA | |
| Genomic coordinates | 3739701-3740085 (strand +) | |
| Length | 385 nt | |
| Sequence (with 50 nt upstream, and -10 box in red; mRNA/asRNA interaction region underlined; toxin ORF in blue; transcript sequence in UPPERCASE) |
atattactgtttatttatacagtaaacttctataatatcactgtacgcaa
→ BLAST sequence
TGTGTTATGCGGGGGCCGCATCGTTACCCGGCGCACTAAGTCCTGGCTGA AACGGGTGGTGCCGTCAGCGCCTTAACCCCGCGTGAGCACACTGTGTTAT GTCAACAAGCACAACGTTTCTCCTTGAGATACCGCGTGCACAACAGCTGG CAACAGGCAGCGGAAAGGTACGTCAGCTGGCAGTGCTCCTGAACCACAGG AGACGCGTATGAACCTGGTGGATATCGCCATTCTTATCCTCAAACTCATT GTTGCAGCACTGCAACTGCTTGATGCTGTTCTGAAATACCTGAAGTAATT CAGATTCAAGTCGCACCAAAGGGGAGCGGGAAACCGCTCCCCTTTTATAT TTAGCGTGCGGGTTGGTGTCGGATGCGATGCTGAC |
|
| Predicted 2D structure | PDF, PNG |
Antitoxin asRNA
| Name | IstR1 |
predicted 2D structure (mfold / VARNA)
|
| Locus_tag | NA | |
| Genomic coordinates | 3739471-3739554 (strand -) | |
| Length | 84 nt | |
| Sequence (with 50 nt upstream; mRNA/asRNA interaction region underlined; transcript sequence in UPPERCASE) |
acgtcaaaattcgtgccgaaattgcgcgttctgcgcggaacacgtatact
→ BLAST sequence
TTCAGTGTTGACATAATACAGTGTGCTTTGCGGTTACCAGCCGCAGGCGA CTGACGAAACCTCGCTCCGGCGGGGTTTTTTGTT |
|
| Predicted 2D structure | PDF, PNG |
Toxin Peptide
| Name | TisB |
predicted 2D structure (PSIPRED / POLYVIEW-2D)
 
hydrophobicity plot (ProtScale) 
|
| Locus_tag | NA | |
| ORF genomic coordinates | 3739909-3739998 (strand +) | |
| ORF length (peptide length) | 90 nt (29 aa) | |
| ORF sequence |
ATGAACCTGGTGGATATCGCCATTCTTATCCTCAAACTCATTGTTGCAGC
→ BLAST sequence
ACTGCAACTGCTTGATGCTGTTCTGAAATACCTGAAGTAA |
|
| Peptide sequence |
MNLVDIAILILKLIVAALQLLDAVLKYLK*
→ BLAST sequence
|
|
| Predicted 2D structure | PDF, GIF | |
| Hydrophobicity plot | PDF, GIF |
