Locus TA06333

Locus

ID TA06333 genomic context (Gviz / IGV.js)
genomic context
Family ShoB/OhsC
Organism Escherichia coli str. K-12 substr. W3110 K-12
Taxonomy Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia; Escherichia coli str. K-12 substr. W3110
Genomic location chromosome
Genomic coordinates 2698746-2699255
Genome accession (GenBank) AC_000091.1
Genome map CGView
Genomic context IGV.js
Upstream gene yfhL : predicted 4Fe-4S cluster-containing protein
Downstream gene acpS : holo-[acyl-carrier-protein] synthase 1

Toxin mRNA

Name ShoB predicted 2D structure (mfold / VARNA)
mRNA structure
Locus_tag NA
Genomic coordinates 2698746-2699032 (strand -)
Length 287 nt
Sequence
(with 50 nt upstream, and -10 box in red; mRNA/asRNA interaction region underlined; toxin ORF in blue; transcript sequence in UPPERCASE)
tggaaagattaacgtgaccgccaattcgtaagtacattaaaattggcttc
GTTATTGAAGATTTTGCTGTGCTTTACACCATGCCACAGAATTCCCCCAT
TGAAACGAGTGGTGTCGTCAAAGCTCTGGTGTGGAGTGCAGCATGCACCC
TCAATAACTCGCACGTTCAGTTTTGGGGAGATGTAAGGGCTAATCTGAAT
GGCTGCATTCCTTGTTTAAGGAAAAACGAATGACTGATTGCCGATACCTG
ATTAAACGGGTCATCAAAATCATCATTGCTGTTTTACAGCTGATCCTTCT
GTTCTTATAACACAAGGAAACGTACTTAAGGTGCGTC
→ BLAST sequence
Predicted 2D structure PDF, PNG

Antitoxin asRNA

Name OhsC predicted 2D structure (mfold / VARNA)
sRNA structure
Locus_tag NA
Genomic coordinates 2699179-2699255 (strand +)
Length 77 nt
Sequence
(with 50 nt upstream; mRNA/asRNA interaction region underlined; transcript sequence in UPPERCASE)
tgcaagttgcttgtaaaagataagtacactgatccataatcgctgttgtt
GAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCC
TTACCAGTTCGGGGGTTTTACTTTTTA
→ BLAST sequence
Predicted 2D structure PDF, PNG

Toxin Peptide

Name ShoB predicted 2D structure (PSIPRED / POLYVIEW-2D)
peptide structurepeptide structure legend

hydrophobicity plot (ProtScale)
peptide hydrophobicity
Locus_tag NA
ORF genomic coordinates 2698773-2698853 (strand -)
ORF length (peptide length) 81 nt (26 aa)
ORF sequence
ATGACTGATTGCCGATACCTGATTAAACGGGTCATCAAAATCATCATTGC
TGTTTTACAGCTGATCCTTCTGTTCTTATAA
→ BLAST sequence
Peptide sequence
MTDCRYLIKRVIKIIIAVLQLILLFL*
→ BLAST sequence
Predicted 2D structure PDF, GIF
Hydrophobicity plot PDF, GIF