Locus TA06257

Locus

ID TA06257 genomic context (Gviz / IGV.js)
genomic context
Family ldr/rdl
Organism Escherichia coli str. K12 substr. DH10B
Taxonomy Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli str. K-12 substr. DH10B
Genomic location chromosome
Genomic coordinates 1308557-1308915
Genome accession (GenBank) NC_010473.1
Genome map CGView
Genomic context IGV.js
Upstream gene kdsA : 3-deoxy-8-phosphooctulonate synthase
Within-locus gene ECDH10B_RS06540 : type I toxin-antitoxin system toxin Ldr family protein
Downstream gene ECDH10B_RS06545 : type I toxin-antitoxin system toxin Ldr family protein

Toxin mRNA

Name Ldr predicted 2D structure (mfold / VARNA)
mRNA structure
Locus_tag NA
Genomic coordinates 1308557-1308915 (strand -)
Length 359 nt
Sequence
(with 50 nt upstream, and -10 box in red; mRNA/asRNA interaction region underlined; toxin ORF in blue; transcript sequence in UPPERCASE)
tcagggatgaagtgaagatgaattgagtcgtagtatccacaccaagccgg
CGTTATCCGGTGAGGCGCAATGTTGCGGGGGCTTTATCCCTGGTGGCATT
GGTTGCTGGAAAGAGAAAACCCCCGCACGTTGAGAGGTACAACCTGACAA
CAGAACGGGGGCTAATCTTGAACCAGAACAATTCAAGAATAGCCGCAAAA
TGTTGTCATTACAACAAGGCGGCTATATGACGCTCGCGCAGTTTGCCATG
ATTTTCTGGCACGACCTGGCAGCACCGATCCTGGCGGGAATTATTACCGC
AGCGATTGTCAGCTGGTGGCGTAACCGGAAGTAAGGTGAAAACGGGCGTC
AGGCTGCCGTGATGGCAATATGCGCCCGAAACCGGCCGCAGGGGTAACAG
CCTGCGGCC
→ BLAST sequence
Predicted 2D structure PDF, PNG

Antitoxin asRNA

Name Rdl predicted 2D structure (mfold / VARNA)
sRNA structure
Locus_tag NA
Genomic coordinates 1308796-1308851 (strand +)
Length 56 nt
Sequence
(with 50 nt upstream; transcript sequence in UPPERCASE)
gccttgttgtaatgacaacattttgcggctattcttgaattgttctggtt
CAAGATTAGCCCCCGTTCTGTTGTCAGGTTGTACCTCTCAACGTGCGGGG
GTTTTC
→ BLAST sequence
Predicted 2D structure PDF, PNG

Toxin Peptide

Name Ldr predicted 2D structure (PSIPRED / POLYVIEW-2D)
peptide structurepeptide structure legend

hydrophobicity plot (ProtScale)
peptide hydrophobicity
Locus_tag NA
ORF genomic coordinates 1308632-1308739 (strand -)
ORF length (peptide length) 108 nt (35 aa)
ORF sequence
ATGACGCTCGCGCAGTTTGCCATGATTTTCTGGCACGACCTGGCAGCACC
GATCCTGGCGGGAATTATTACCGCAGCGATTGTCAGCTGGTGGCGTAACC
GGAAGTAA
→ BLAST sequence
Peptide sequence
MTLAQFAMIFWHDLAAPILAGIITAAIVSWWRNRK*
→ BLAST sequence
Predicted 2D structure PDF, GIF
Hydrophobicity plot PDF, GIF