Locus TA05742

Locus

ID TA05742 genomic context (Gviz / IGV.js)
genomic context
Family txpA/ratA
Organism Enterococcus faecalis V583 plasmid pTEF1
Taxonomy Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus; Enterococcus faecalis V583
Genomic location plasmid pTEF1
Genomic coordinates 13512-13855
Genome accession (GenBank) NC_004669.1
Genome map CGView
Genomic context IGV.js
Upstream gene EF_RS16235 : IS6 family transposase
Within-locus gene EF_RS16890 : putative holin-like toxin
Downstream gene EF_RS16245 : single-stranded DNA-binding protein

Toxin mRNA

Name TxpA predicted 2D structure (mfold / VARNA)
mRNA structure
Locus_tag NA
Genomic coordinates 13512-13768 (strand +)
Length 257 nt
Sequence
(with 50 nt upstream; mRNA/asRNA interaction region underlined; toxin ORF in blue; transcript sequence in UPPERCASE)
gaattgatagtaaagtttaatgacggtggctatccaatcgaaagtgaggt
GGTGCGTATGAACGTACTTCCAAAATCTATAGAAAGGAGAAGCCTTTTGT
CCGTTTCGGAAAGTTTGCAACTAATGCTTGCGTTTGGTGGGTTTACATTG
ACCCTAATCACAACCATTGTTGCCATTCTGAACTATAAAGACAAAAAGAA
ATAACCGTCACTTTAGCAGGAGACCGGTTATTTCTAAATAACTTATAAAA
ACTCTGCCACCGTCTTTAGCGGTGCTATCAATGAGGGCGTATTACCAGTA
CGTCCTC
→ BLAST sequence
Predicted 2D structure PDF, PNG

Antitoxin asRNA

Name RatA predicted 2D structure (mfold / VARNA)
sRNA structure
Locus_tag NA
Genomic coordinates 13599-13855 (strand -)
Length 257 nt
Sequence
(with 50 nt upstream; mRNA/asRNA interaction region underlined; transcript sequence in UPPERCASE)
tgaatatggctacaatcaatagatctgttttttcatgcgcgccacactcc
CACCGCCACCGTCGTTTAGGCGCGCATGAAAAAAGGTAGGCATTCGCCTA
CCTTTTCGCACAAAATGTGGTATAATAATTATGTAAAGAGGACGTACTGG
TAATACGCCCTCATTGATAGCACCGCTAAAGACGGTGGCAGAGTTTTTAT
AAGTTATTTAGAAATAACCGGTCTCCTGCTAAAGTGACGGTTATTTCTTT
TTGTCTTTATAGTTCAGAATGGCAACAATGGTTGTGATTAGGGTCAATGT
AAACCCA
→ BLAST sequence
Predicted 2D structure PDF, PNG

Toxin Peptide

Name TxpA predicted 2D structure (PSIPRED / POLYVIEW-2D)
peptide structurepeptide structure legend

hydrophobicity plot (ProtScale)
peptide hydrophobicity
Locus_tag NA
ORF genomic coordinates 13558-13665 (strand +)
ORF length (peptide length) 108 nt (35 aa)
ORF sequence
TTGTCCGTTTCGGAAAGTTTGCAACTAATGCTTGCGTTTGGTGGGTTTAC
ATTGACCCTAATCACAACCATTGTTGCCATTCTGAACTATAAAGACAAAA
AGAAATAA
→ BLAST sequence
Peptide sequence
LSVSESLQLMLAFGGFTLTLITTIVAILNYKDKKK*
→ BLAST sequence
Predicted 2D structure PDF, GIF
Hydrophobicity plot PDF, GIF