Locus TA05741

Locus

ID TA05741 genomic context (Gviz / IGV.js)
genomic context
Family txpA/ratA
Organism Enterococcus faecalis V583 chromosome
Taxonomy Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus; Enterococcus faecalis V583
Genomic location chromosome
Genomic coordinates 681329-681567
Genome accession (GenBank) NC_004668.1
Genome map CGView
Genomic context IGV.js
Upstream gene ligA : NAD-dependent DNA ligase LigA
Within-locus gene EF_RS16775 : putative holin-like toxin
Downstream gene gatC : Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC

Toxin mRNA

Name TxpA predicted 2D structure (mfold / VARNA)
mRNA structure
Locus_tag NA
Genomic coordinates 681329-681564 (strand +)
Length 236 nt
Sequence
(with 50 nt upstream, and -10 box in red; mRNA/asRNA interaction region underlined; toxin ORF in blue; transcript sequence in UPPERCASE)
ttgagaaaggaggttgatgcttatgcgcaattcttcttatcttaatgaaa
GGAGCAATGTTTTTGTCCGTTGAAGCAGCGTTGGGACTGATGATTGGTTT
TGCAACACTTGTTGTGACCATTATCTTCGTTATCTTAGCGCTTGTCTTAG
ACAACAAAAATAACCGTTCATAAGCTTTGAGGAGCTGAACGGTTAAGCGT
TTGAAATAAAACCAATAACTCAGTAAGCCGCTAGTTCTTATAACTAGTAG
TGGCTACTAGAGAGGTATGTTCCTGCATATCTCTCT
→ BLAST sequence
Predicted 2D structure PDF, PNG

Antitoxin asRNA

Name RatA predicted 2D structure (mfold / VARNA)
sRNA structure
Locus_tag NA
Genomic coordinates 681362-681567 (strand -)
Length 206 nt
Sequence
(with 50 nt upstream, and -10 box in red; mRNA/asRNA interaction region underlined; transcript sequence in UPPERCASE)
tgataatttgtcgctcgcaaaaatgacggaaacatgttattatgaaaatg
AAAAGAGAGATATGCAGGAACATACCTCTCTAGTAGCCACTACTAGTTAT
AAGAACTAGCGGCTTACTGAGTTATTGGTTTTATTTCAAACGCTTAACCG
TTCAGCTCCTCAAAGCTTATGAACGGTTATTTTTGTTGTCTAAGACAAGC
GCTAAGATAACGAAGATAATGGTCACAACAAGTGTTGCAAAACCAATCAT
CAGTCC
→ BLAST sequence
Predicted 2D structure PDF, PNG

Toxin Peptide

Name TxpA predicted 2D structure (PSIPRED / POLYVIEW-2D)
peptide structurepeptide structure legend

hydrophobicity plot (ProtScale)
peptide hydrophobicity
Locus_tag NA
ORF genomic coordinates 681359-681451 (strand +)
ORF length (peptide length) 93 nt (30 aa)
ORF sequence
TTGGGACTGATGATTGGTTTTGCAACACTTGTTGTGACCATTATCTTCGT
TATCTTAGCGCTTGTCTTAGACAACAAAAATAACCGTTCATAA
→ BLAST sequence
Peptide sequence
LGLMIGFATLVVTIIFVILALVLDNKNNRS*
→ BLAST sequence
Predicted 2D structure PDF, GIF
Hydrophobicity plot PDF, GIF