Locus TA05739

Locus

ID TA05739 genomic context (Gviz / IGV.js)
genomic context
Family txpA/ratA
Organism Enterococcus faecalis V583 chromosome
Taxonomy Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus; Enterococcus faecalis V583
Genomic location chromosome
Genomic coordinates 3123440-3123823
Genome accession (GenBank) NC_004668.1
Genome map CGView
Genomic context IGV.js
Upstream gene EF_RS15350 : WxL domain-containing protein
Within-locus gene EF_RS15355 : putative holin-like toxin
Downstream gene EF_RS15360 : WxL domain-containing protein

Toxin mRNA

Name TxpA predicted 2D structure (mfold / VARNA)
mRNA structure
Locus_tag NA
Genomic coordinates 3123440-3123731 (strand +)
Length 292 nt
Sequence
(with 50 nt upstream, and -10 box in red; mRNA/asRNA interaction region underlined; toxin ORF in blue; transcript sequence in UPPERCASE)
aaatatattgaaaactaattattttttagttctaaatggtataataaaag
TGTAGAGAAGTTATGGCGGTGGCTATCCAATCTGAAAGGTGGTGGTGCTT
ATGAATGTAAGTACTAAAATCTATGAAAGGAGAGGCCTTTTGTCTATCGC
AGAAGCTTTAGCTCTGATGATTAGTTTCGGTTCTTTTATCGCGACTTTAA
TCTTCGGAATCCTAAAGGTTGTTAAAGAAGACAAGAAAAAATAACCGTTT
ACTTTGACTGAGTACGGTTATTTTTTGTAACAAAATCGGTCACCGTCTTA
AACGGCTCTACACTAGAGAGGTATGTTACAGCATATCTCTCT
→ BLAST sequence
Predicted 2D structure PDF, PNG

Antitoxin asRNA

Name RatA predicted 2D structure (mfold / VARNA)
sRNA structure
Locus_tag NA
Genomic coordinates 3123565-3123823 (strand -)
Length 259 nt
Sequence
(with 50 nt upstream; mRNA/asRNA interaction region underlined; transcript sequence in UPPERCASE)
ggccaacaataccaagccgccgtcacgtggaatttagtgactggccccta
AAATAAAAATGCCCGAGCCTTAGAAAAATAAGAGGCTCGGGCATTTTTAT
TGATGGTCTTTTGATGGTCGTTGTGCTATAATAGCATTGAAAAGAGAGAT
ATGCTGTAACATACCTCTCTAGTGTAGAGCCGTTTAAGACGGTGACCGAT
TTTGTTACAAAAAATAACCGTACTCAGTCAAAGTAAACGGTTATTTTTTC
TTGTCTTCTTTAACAACCTTTAGGATTCCGAAGATTAAAGTCGCGATAAA
AGAACCGAA
→ BLAST sequence
Predicted 2D structure PDF, PNG

Toxin Peptide

Name TxpA predicted 2D structure (PSIPRED / POLYVIEW-2D)
peptide structurepeptide structure legend

hydrophobicity plot (ProtScale)
peptide hydrophobicity
Locus_tag NA
ORF genomic coordinates 3123484-3123633 (strand +)
ORF length (peptide length) 150 nt (49 aa)
ORF sequence
GTGCTTATGAATGTAAGTACTAAAATCTATGAAAGGAGAGGCCTTTTGTC
TATCGCAGAAGCTTTAGCTCTGATGATTAGTTTCGGTTCTTTTATCGCGA
CTTTAATCTTCGGAATCCTAAAGGTTGTTAAAGAAGACAAGAAAAAATAA
→ BLAST sequence
Peptide sequence
VLMNVSTKIYERRGLLSIAEALALMISFGSFIATLIFGILKVVKEDKKK*
→ BLAST sequence
Predicted 2D structure PDF, GIF
Hydrophobicity plot PDF, GIF