Locus TA05738

Locus

ID TA05738 genomic context (Gviz / IGV.js)
genomic context
Family txpA/ratA
Organism Enterococcus faecalis V583 chromosome
Taxonomy Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus; Enterococcus faecalis V583
Genomic location chromosome
Genomic coordinates 3118752-3119134
Genome accession (GenBank) NC_004668.1
Genome map CGView
Genomic context IGV.js
Upstream gene EF_RS15340 : phosphatase PAP2/LCP family protein
Within-locus gene EF_RS16860 : putative holin-like toxin
Downstream gene EF_RS15350 : WxL domain-containing protein

Toxin mRNA

Name TxpA predicted 2D structure (mfold / VARNA)
mRNA structure
Locus_tag NA
Genomic coordinates 3118752-3119046 (strand +)
Length 295 nt
Sequence
(with 50 nt upstream, and -10 box in red; mRNA/asRNA interaction region underlined; toxin ORF in blue; transcript sequence in UPPERCASE)
aaatatattgaaaactaattattttttagccccacatggtataatgtatg
TGTAGAGAAGTTATGGCGGTGGCTATCCAATCTGAAAGAGAGGTGATGCG
TATGCACGTATTTCCGAAATTCACAGAAAGGAGAGGCCTTTTGTCAGCAT
ATGAAACAATTCAGACAATTCTTGGGTTTGGTATGTTTACCATTGCTTTG
ATTGCGCTGATTGTGAAATTGCTTAAAAATGACAAGAAAAAATAACCGTC
TACTTTGACCAAGCACGGTTATTTTTAAATAATAAAATTGGTCACCGTCT
TAAACGGCTCTACATCAGAGAGATATGTTGGAAGCATATCTCTCT
→ BLAST sequence
Predicted 2D structure PDF, PNG

Antitoxin asRNA

Name RatA predicted 2D structure (mfold / VARNA)
sRNA structure
Locus_tag NA
Genomic coordinates 3118879-3119134 (strand -)
Length 256 nt
Sequence
(with 50 nt upstream; mRNA/asRNA interaction region underlined; transcript sequence in UPPERCASE)
acaacagtacaatgctgcggtcacttggaatttggtgactggtccctaaa
ATAAAAATGCCCGAGCCTTGAAATAGGAGGCTCAGGCATTTTTTATTGAT
GGTCTTTTTAGGGTTGTTGTGCTATAATGATAAAGAAAAGAGAGATATGC
TTCCAACATATCTCTCTGATGTAGAGCCGTTTAAGACGGTGACCAATTTT
ATTATTTAAAAATAACCGTGCTTGGTCAAAGTAGACGGTTATTTTTTCTT
GTCATTTTTAAGCAATTTCACAATCAGCGCAATCAAAGCAATGGTAAACA
TACCAA
→ BLAST sequence
Predicted 2D structure PDF, PNG

Toxin Peptide

Name TxpA predicted 2D structure (PSIPRED / POLYVIEW-2D)
peptide structurepeptide structure legend

hydrophobicity plot (ProtScale)
peptide hydrophobicity
Locus_tag NA
ORF genomic coordinates 3118794-3118946 (strand +)
ORF length (peptide length) 153 nt (50 aa)
ORF sequence
GTGATGCGTATGCACGTATTTCCGAAATTCACAGAAAGGAGAGGCCTTTT
GTCAGCATATGAAACAATTCAGACAATTCTTGGGTTTGGTATGTTTACCA
TTGCTTTGATTGCGCTGATTGTGAAATTGCTTAAAAATGACAAGAAAAAA
TAA
→ BLAST sequence
Peptide sequence
VMRMHVFPKFTERRGLLSAYETIQTILGFGMFTIALIALIVKLLKNDKKK
*
→ BLAST sequence
Predicted 2D structure PDF, GIF
Hydrophobicity plot PDF, GIF