Locus TA05737

Locus

ID TA05737 genomic context (Gviz / IGV.js)
genomic context
Family txpA/ratA
Organism Enterococcus faecalis V583 chromosome
Taxonomy Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus; Enterococcus faecalis V583
Genomic location chromosome
Genomic coordinates 2962267-2962585
Genome accession (GenBank) NC_004668.1
Genome map CGView
Genomic context IGV.js
Upstream gene EF_RS14625 : putative holin-like toxin
Within-locus gene EF_RS14630 : putative holin-like toxin
Downstream gene gshAB : bifunctional glutamate--cysteine ligase/glutathione synthetase

Toxin mRNA

Name TxpA predicted 2D structure (mfold / VARNA)
mRNA structure
Locus_tag NA
Genomic coordinates 2962288-2962585 (strand -)
Length 298 nt
Sequence
(with 50 nt upstream, and -10 box in red; mRNA/asRNA interaction region underlined; toxin ORF in blue; transcript sequence in UPPERCASE)
ctttataaaaacgttttcttggtgcacccaataggttatactaaaactat
TACCAATGAAAGTTGTATGACGGTGGCTCTGAGTTAGAGAGGCAGGTGAT
GCCTATGTGTATCCGATGCACTTTAACGAAAGGAGCATTTTTTTTGTCAA
TCGAAGCGACATTGGAATTGATGATTAGTTTTGCAACCCTTGTTGCGTTA
CTGATTTTCGGTATCCTTGAAGCAACGAAAAACGATAAAAAATAACCGTT
CATAAGCTTAGACGGCTGAACGGTTAAAGAACAACAAAAACTTAACTCAG
TAAGCCACCAGTTCTTATAACTGGTGTTGGTATAAAGGAGAGGTATGT
→ BLAST sequence
Predicted 2D structure PDF, PNG

Antitoxin asRNA

Name RatA predicted 2D structure (mfold / VARNA)
sRNA structure
Locus_tag NA
Genomic coordinates 2962267-2962454 (strand +)
Length 188 nt
Sequence
(with 50 nt upstream, and -10 box in red; mRNA/asRNA interaction region underlined; transcript sequence in UPPERCASE)
tataagttatgagcgcttccattttaaatagaattatgctattatgaaaa
TGAAAAGAGAGATATGCTACTACATACCTCTCCTTTATACCAACACCAGT
TATAAGAACTGGTGGCTTACTGAGTTAAGTTTTTGTTGTTCTTTAACCGT
TCAGCCGTCTAAGCTTATGAACGGTTATTTTTTATCGTTTTTCGTTGCTT
CAAGGATACCGAAAATCAGTAACGCAACAAGGGTTGCA
→ BLAST sequence
Predicted 2D structure PDF, PNG

Toxin Peptide

Name TxpA predicted 2D structure (PSIPRED / POLYVIEW-2D)
peptide structurepeptide structure legend

hydrophobicity plot (ProtScale)
peptide hydrophobicity
Locus_tag NA
ORF genomic coordinates 2962391-2962537 (strand -)
ORF length (peptide length) 147 nt (48 aa)
ORF sequence
ATGCCTATGTGTATCCGATGCACTTTAACGAAAGGAGCATTTTTTTTGTC
AATCGAAGCGACATTGGAATTGATGATTAGTTTTGCAACCCTTGTTGCGT
TACTGATTTTCGGTATCCTTGAAGCAACGAAAAACGATAAAAAATAA
→ BLAST sequence
Peptide sequence
MPMCIRCTLTKGAFFLSIEATLELMISFATLVALLIFGILEATKNDKK*
→ BLAST sequence
Predicted 2D structure PDF, GIF
Hydrophobicity plot PDF, GIF