Locus TA05736

Locus

ID TA05736 genomic context (Gviz / IGV.js)
genomic context
Family txpA/ratA
Organism Enterococcus faecalis V583 chromosome
Taxonomy Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus; Enterococcus faecalis V583
Genomic location chromosome
Genomic coordinates 2961801-2962132
Genome accession (GenBank) NC_004668.1
Genome map CGView
Genomic context IGV.js
Upstream gene EF_RS14620 : YueI family protein
Within-locus gene EF_RS14625 : putative holin-like toxin
Downstream gene EF_RS14630 : putative holin-like toxin

Toxin mRNA

Name TxpA predicted 2D structure (mfold / VARNA)
mRNA structure
Locus_tag NA
Genomic coordinates 2961837-2962132 (strand -)
Length 296 nt
Sequence
(with 50 nt upstream; mRNA/asRNA interaction region underlined; toxin ORF in blue; transcript sequence in UPPERCASE)
ttggtacacccaataggttatactaaagctattaccaatgaaagttgtat
GACGGTGGCTCTGAGTTAGAGAGGCAGGTGATGCCTATGTGTATCCGATG
CACTTTAACGAAAGGAGCATTTTTTTGTCAATCGAAGCGGCATTGGAATT
GATGATTAGTTTTGCAGCGTTTGTTGCACTACTGATTTTCGGTATCCTTG
AAGCAACGAAAAACAATAAAAAATAACCGTTCACAAGCTTCGTAGGCCGA
ACGGTTAAGATTCAAAACTTAACTCAGTAAGCCACCAGTTCTTATAACTG
GTGTTGGTATAAAAGGAGAGGTATGTACCCGCATACCTCTCTTTTT
→ BLAST sequence
Predicted 2D structure PDF, PNG

Antitoxin asRNA

Name RatA predicted 2D structure (mfold / VARNA)
sRNA structure
Locus_tag NA
Genomic coordinates 2961801-2962008 (strand +)
Length 208 nt
Sequence
(with 50 nt upstream; mRNA/asRNA interaction region underlined; transcript sequence in UPPERCASE)
ttggcaaaaactatttcactcataaaaagctcaaggaaagttatgagcgc
TTCCATTTTAAATAGAATTATGCTATTATGAAAATGAAAAAGAGAGGTAT
GCGGGTACATACCTCTCCTTTTATACCAACACCAGTTATAAGAACTGGTG
GCTTACTGAGTTAAGTTTTGAATCTTAACCGTTCGGCCTACGAAGCTTGT
GAACGGTTATTTTTTATTGTTTTTCGTTGCTTCAAGGATACCGAAAATCA
GTAGTGCA
→ BLAST sequence
Predicted 2D structure PDF, PNG

Toxin Peptide

Name TxpA predicted 2D structure (PSIPRED / POLYVIEW-2D)
peptide structurepeptide structure legend

hydrophobicity plot (ProtScale)
peptide hydrophobicity
Locus_tag NA
ORF genomic coordinates 2961957-2962094 (strand -)
ORF length (peptide length) 138 nt (45 aa)
ORF sequence
GTGTATCCGATGCACTTTAACGAAAGGAGCATTTTTTTGTCAATCGAAGC
GGCATTGGAATTGATGATTAGTTTTGCAGCGTTTGTTGCACTACTGATTT
TCGGTATCCTTGAAGCAACGAAAAACAATAAAAAATAA
→ BLAST sequence
Peptide sequence
VYPMHFNERSIFLSIEAALELMISFAAFVALLIFGILEATKNNKK*
→ BLAST sequence
Predicted 2D structure PDF, GIF
Hydrophobicity plot PDF, GIF