Locus TA04746

Locus

ID TA04746 genomic context (Gviz / IGV.js)
genomic context
Family RalR/RalA
Organism Escherichia coli str. K-12 substr. MG1655
Taxonomy Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli str. K-12 substr. MG1655
Genomic location chromosome
Genomic coordinates 1413556-1413927
Genome accession (GenBank) NC_000913.3
Genome map CGView
Genomic context IGV.js
Upstream gene rcbA : double-strand break reduction protein
Within-locus gene ralA : small regulatory RNA antitoxin RalA
ralR : endodeoxyribonuclease toxin RalR
Downstream gene recT : recombinase RecT

Toxin mRNA

Name RalR predicted 2D structure (mfold / VARNA)
mRNA structure
Locus_tag
Genomic coordinates 1413733-1413927 (strand -)
Length 195 nt
Sequence
(with 50 nt upstream; mRNA/asRNA interaction region underlined; toxin ORF in blue; transcript sequence in UPPERCASE)
ctggcggtgtaatgcaccgccaacttgaaatattttttatgagaaaaatt
ATGAGATATGACAATGTTAAACCATGTCCATTTTGTGGTTGTCCATCAGT
AACGGTGAAAGCCATTTCAGGATATTACCGAGCGAAGTGTAACGGATGCG
AATCCCGAACCGGTTATGGTGGAAGTGAAAAAGAAGCACTCGAAAGATGG
AATAAACGAACCACTGGAAATAATAATGGAGGTGTTCATGTATAA
→ BLAST sequence
Predicted 2D structure PDF, PNG

Antitoxin asRNA

Name RalA predicted 2D structure (mfold / VARNA)
sRNA structure
Locus_tag
Genomic coordinates 1413556-1413734 (strand +)
Length 179 nt
Sequence
(with 50 nt upstream, and -10 box in red; mRNA/asRNA interaction region underlined; transcript sequence in UPPERCASE)
attattaataatcagctatgaagttttaatttgaatacaatgcaattctc
GAGGACTGAAGTTTCTCGCAATTAAAATTTATCAGTTTTACTTTCTGCTC
TCTGGAAACGCCTGCTTCTTTTTTACCTGAGAGCATTTTTTCGCATTCTG
ATTTCGTTAGTTTAGATTTTGAATATCTTGTCCAGTTAGTAGGAGTGCCA
CCTTCCTTTTCAATAGTGGCGGTAATTTT
→ BLAST sequence
Predicted 2D structure PDF, PNG

Toxin Peptide

Name RalR predicted 2D structure (PSIPRED / POLYVIEW-2D)
peptide structurepeptide structure legend

hydrophobicity plot (ProtScale)
peptide hydrophobicity
Locus_tag
ORF genomic coordinates 1413733-1413927 (strand -)
ORF length (peptide length) 195 nt (64 aa)
ORF sequence
ATGAGATATGACAATGTTAAACCATGTCCATTTTGTGGTTGTCCATCAGT
AACGGTGAAAGCCATTTCAGGATATTACCGAGCGAAGTGTAACGGATGCG
AATCCCGAACCGGTTATGGTGGAAGTGAAAAAGAAGCACTCGAAAGATGG
AATAAACGAACCACTGGAAATAATAATGGAGGTGTTCATGTATAA
→ BLAST sequence
Peptide sequence
MRYDNVKPCPFCGCPSVTVKAISGYYRAKCNGCESRTGYGGSEKEALERW
NKRTTGNNNGGVHV*
→ BLAST sequence
Predicted 2D structure PDF, GIF
Hydrophobicity plot PDF, GIF