Locus TA04744

Locus

ID TA04744 genomic context (Gviz / IGV.js)
genomic context
Family fst/RNAII
Organism Enterococcus faecalis V583 chromosome
Taxonomy Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus; Enterococcus faecalis V583
Genomic location chromosome
Genomic coordinates 381642-381866
Genome accession (GenBank) NC_004668.1
Genome map CGView
Genomic context IGV.js
Upstream gene EF_RS02025 : PTS sugar transporter subunit IIA
Within-locus gene EF_RS02030 : type I toxin-antitoxin system Fst family toxin
Downstream gene EF_RS02035 : PTS mannitol-specific transporter subunit IIBC

Toxin mRNA

Name Fst predicted 2D structure (mfold / VARNA)
mRNA structure
Locus_tag EF0409
Genomic coordinates 381671-381866 (strand -)
Length 196 nt
Sequence
(with 50 nt upstream, and -10 box in red; mRNA/asRNA interaction region underlined; toxin ORF in blue; transcript sequence in UPPERCASE)
tataataatttcaataataaatgaacaactttttatgctatactcaaatt
GGCGACTTGCCTCGAAAGGAGGTGCATCACATGTACGAGATTGTCACAAA
AATTCTTGTGCCGATTTTTGTCGGGATTGTCCTGAAACTTGTAACCATTT
GGTTGGAAAAACAGAACGAGGAATAAACAAGTTGCTTCCAACCGCTGCTG
TCTAAACAGCAAAAAAAGACACCCTACCACAATAGGGTGTCTTTTT
→ BLAST sequence
Predicted 2D structure PDF, PNG

Antitoxin asRNA

Name RNAII predicted 2D structure (mfold / VARNA)
sRNA structure
Locus_tag
Genomic coordinates 381642-381706 (strand +)
Length 65 nt
Sequence
(with 50 nt upstream, and -10 box in red; mRNA/asRNA interaction region underlined; transcript sequence in UPPERCASE)
ataagaagattccttgacaaaaaataggccctatgataaatttaaagtaa
CTTGTGACAAAGTCGTGCATGGATGCACTAAAAAGACACCCTATTGTGGT
AGGGTGTCTTTTTTT
→ BLAST sequence
Predicted 2D structure PDF, PNG

Toxin Peptide

Name Fst predicted 2D structure (PSIPRED / POLYVIEW-2D)
peptide structurepeptide structure legend

hydrophobicity plot (ProtScale)
peptide hydrophobicity
Locus_tag EF0409
ORF genomic coordinates 381741-381836 (strand -)
ORF length (peptide length) 96 nt (31 aa)
ORF sequence
ATGTACGAGATTGTCACAAAAATTCTTGTGCCGATTTTTGTCGGGATTGT
CCTGAAACTTGTAACCATTTGGTTGGAAAAACAGAACGAGGAATAA
→ BLAST sequence
Peptide sequence
MYEIVTKILVPIFVGIVLKLVTIWLEKQNEE*
→ BLAST sequence
Predicted 2D structure PDF, GIF
Hydrophobicity plot PDF, GIF