Locus TA04743

Locus

ID TA04743 genomic context (Gviz / IGV.js)
genomic context
Family fst/RNAII
Organism Enterococcus faecalis V583 plasmid pTEF2
Taxonomy Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus; Enterococcus faecalis V583
Genomic location plasmid pTEF2
Genomic coordinates 55455-55683
Genome accession (GenBank) NC_004671.1
Genome map CGView
Genomic context IGV.js
Upstream gene EF_RS16880 : hypothetical protein
Within-locus gene EF_RS16055 : type I toxin-antitoxin system Fst family toxin
Downstream gene EF_RS16060 : replication control protein PrgN

Toxin mRNA

Name Fst predicted 2D structure (mfold / VARNA)
mRNA structure
Locus_tag
Genomic coordinates 55455-55653 (strand +)
Length 199 nt
Sequence
(with 50 nt upstream, and -10 box in red; mRNA/asRNA interaction region underlined; toxin ORF in blue; transcript sequence in UPPERCASE)
gaaggtttactactgtataggtatattcgaatttatgttataattatttc
GGCAACTTGCCTCCGATTGGGGGTGCTGTTTATGTACGAACTTATGTCTT
TGGTTATTGCCCCACTTTTTGTGGGTCTAGTAATCTTACTAGTTGACCAT
TGGTTAGATGATTAGCAGATAACCATGCAAGTTGTCCTAGCCCACACGTC
TATCCGCAAGACGAAAAAAATAGCCCAAACCTCGTCACAGGTTTGGGCT
→ BLAST sequence
Predicted 2D structure PDF, PNG

Antitoxin asRNA

Name RNAII predicted 2D structure (mfold / VARNA)
sRNA structure
Locus_tag
Genomic coordinates 55618-55683 (strand -)
Length 66 nt
Sequence
(with 50 nt upstream, and -10 box in red; mRNA/asRNA interaction region underlined; transcript sequence in UPPERCASE)
gcttcttttttgttgaccttctttaataatgtgttatactaataatgcgg
AAGACATAAGTTCGATATGAACAGCACAATAGCCCAAACCTGTGACGAGG
TTTGGGCTATTTTTTT
→ BLAST sequence
Predicted 2D structure PDF, PNG

Toxin Peptide

Name Fst predicted 2D structure (PSIPRED / POLYVIEW-2D)
peptide structurepeptide structure legend

hydrophobicity plot (ProtScale)
peptide hydrophobicity
Locus_tag
ORF genomic coordinates 55486-55569 (strand +)
ORF length (peptide length) 84 nt (27 aa)
ORF sequence
ATGTACGAACTTATGTCTTTGGTTATTGCCCCACTTTTTGTGGGTCTAGT
AATCTTACTAGTTGACCATTGGTTAGATGATTAG
→ BLAST sequence
Peptide sequence
MYELMSLVIAPLFVGLVILLVDHWLDD*
→ BLAST sequence
Predicted 2D structure PDF, GIF
Hydrophobicity plot PDF, GIF