Locus TA04741

Locus

ID TA04741 genomic context (Gviz / IGV.js)
genomic context
Family fst/RNAII
Organism Enterococcus faecalis plasmid pAD1
Taxonomy Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus; Enterococcus faecalis
Genomic location plasmid pAD1
Genomic coordinates 4076-4313
Genome accession (GenBank) L01794.1
Genome map CGView
Genomic context IGV.js
Upstream gene RNAII : par antidote
Within-locus gene RNAI : unknown
Downstream gene AAF03909.1 : unknown

Toxin mRNA

Name Fst predicted 2D structure (mfold / VARNA)
mRNA structure
Locus_tag
Genomic coordinates 4103-4313 (strand -)
Length 211 nt
Sequence
(with 50 nt upstream, and -10 box in red; mRNA/asRNA interaction region underlined; toxin ORF in blue; transcript sequence in UPPERCASE)
aggttttattattaaattggcagaatttcaaattatgatataattaatgc
GGCAGCTCGCCTCGATTGGAGGTGTGTTATTTGTGAAAGATTTAATGTCG
TTGGTTATCGCACCAATCTTTGTAGGATTGGTTCTGGAAATGATTTCTCG
TGTGTTGGACGAGGAAGACGATAGCCGAAAGTAAGCTGCTATCAACACAC
ACGCTAGAAGTCGCAACTAGTGTAAAAAAAAGCAATCCTATTCGCCGTAG
GATTGCTTTTT
→ BLAST sequence
Predicted 2D structure PDF, PNG

Antitoxin asRNA

Name RNAII predicted 2D structure (mfold / VARNA)
sRNA structure
Locus_tag
Genomic coordinates 4076-4140 (strand +)
Length 65 nt
Sequence
(with 50 nt upstream, and -10 box in red; mRNA/asRNA interaction region underlined; transcript sequence in UPPERCASE)
tagtcacaaaacttgacccaaaataaaaatatgctatactaaaagtgcga
AACGACATTAAATCGTACAGATAACACAAAAAGCAATCCTACGGCGAATA
GGATTGCTTTTTTTT
→ BLAST sequence
Predicted 2D structure PDF, PNG

Toxin Peptide

Name Fst predicted 2D structure (PSIPRED / POLYVIEW-2D)
peptide structurepeptide structure legend

hydrophobicity plot (ProtScale)
peptide hydrophobicity
Locus_tag
ORF genomic coordinates 4180-4281 (strand -)
ORF length (peptide length) 102 nt (33 aa)
ORF sequence
GTGAAAGATTTAATGTCGTTGGTTATCGCACCAATCTTTGTAGGATTGGT
TCTGGAAATGATTTCTCGTGTGTTGGACGAGGAAGACGATAGCCGAAAGT
AA
→ BLAST sequence
Peptide sequence
VKDLMSLVIAPIFVGLVLEMISRVLDEEDDSRK*
→ BLAST sequence
Predicted 2D structure PDF, GIF
Hydrophobicity plot PDF, GIF