Locus TA04739

Locus

ID TA04739 genomic context (Gviz / IGV.js)
genomic context
Family Zor/Orz
Organism Escherichia coli O157:H7 str. EDL933 genome.
Taxonomy Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli O157:H7 str. EDL933
Genomic location chromosome
Genomic coordinates 2953370-2953778
Genome accession (GenBank) NC_002655.2
Genome map CGView
Genomic context IGV.js
Upstream gene yehK : protein YehK
Downstream gene yehL : MoxR family ATPase

Toxin mRNA

Name zorO predicted 2D structure (mfold / VARNA)
mRNA structure
Locus_tag NA
Genomic coordinates 2953370-2953633 (strand -)
Length 264 nt
Sequence
(with 50 nt upstream, and -10 box in red; mRNA/asRNA interaction region underlined; toxin ORF in blue; transcript sequence in UPPERCASE)
catatccacactccattgcaattcagtgagtgagatttataatcctgccc
GTTGGGAGGTTGTGCCGGATCGGACCAATTTTAAGTCCTGGCTGCCGGAC
GGGTGGTGCCGCAGGCGGTGCCCTGATCCGGAGAGCAACGTTTCGTACCA
ACATACGTAAACCAGTATCGACAGGCAGTGTAAGGGTAAGGTGCTGGTGT
TGCGCTCCTTAATAAGGAGAGCGGATGGACACGCTGACACAAAAGTTAAC
CGTGCTCATTGCCGTACTGGAGTTATTAGTGGCTCTGTTACGGTTGATTG
ATTTGTTGAAGTAA
→ BLAST sequence
Predicted 2D structure PDF, PNG

Antitoxin asRNA

Name orzO predicted 2D structure (mfold / VARNA)
sRNA structure
Locus_tag NA
Genomic coordinates 2953698-2953778 (strand +)
Length 81 nt
Sequence
(with 50 nt upstream, and -10 box in red; mRNA/asRNA interaction region underlined; transcript sequence in UPPERCASE)
atctcactcactgaattgcaatggagtgtggatatggttataatttattc
GTTGGTACGAAATGTTGCACAATCAGCAAGTTAGCGTCACTGTAGTAAAT
AAAAGAACCTGCCTCACCAGCAGGTTTTTTT
→ BLAST sequence
Predicted 2D structure PDF, PNG

Toxin Peptide

Name zorO predicted 2D structure (PSIPRED / POLYVIEW-2D)
peptide structurepeptide structure legend

hydrophobicity plot (ProtScale)
peptide hydrophobicity
Locus_tag NA
ORF genomic coordinates 2953370-2953459 (strand -)
ORF length (peptide length) 90 nt (29 aa)
ORF sequence
ATGGACACGCTGACACAAAAGTTAACCGTGCTCATTGCCGTACTGGAGTT
ATTAGTGGCTCTGTTACGGTTGATTGATTTGTTGAAGTAA
→ BLAST sequence
Peptide sequence
MDTLTQKLTVLIAVLELLVALLRLIDLLK*
→ BLAST sequence
Predicted 2D structure PDF, GIF
Hydrophobicity plot PDF, GIF