Locus TA04738

Locus

ID TA04738 genomic context (Gviz / IGV.js)
genomic context
Family yonT/as-yonT
Organism Bacillus subtilis subtilis str. 168 chromosome
Taxonomy Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus subtilis subsp. subtilis str. 168
Genomic location chromosome
Genomic coordinates 2219743-2219981
Genome accession (GenBank) NC_000964.3
Genome map CGView
Genomic context IGV.js
Upstream gene yoyJ : conserved protein of unknown function (toxin/antitoxin island); phage SPbeta
Within-locus gene BSU_misc_RNA_90 : antisense RNA of toxin SpbT
spbT : toxin; phage SPbeta
Downstream gene yonS : putative hydrolase lipoprotein; phage SPbeta

Toxin mRNA

Name yonT predicted 2D structure (mfold / VARNA)
mRNA structure
Locus_tag NA
Genomic coordinates 2219743-2219981 (strand -)
Length 239 nt
Sequence
(with 50 nt upstream, and -10 box in red; mRNA/asRNA interaction region underlined; toxin ORF in blue; transcript sequence in UPPERCASE)
aatataaaaaatatgtatataaaaatcatgaattatgttataatagagtc
ATAGGAAAGGAGGTGTACATAGTGCTTGAGAAAATGGGTATCGTAGTTGC
TTTCCTCATATCTTTAACGGTTCTTACAATCAACAGTCTAACAATAGTTG
AGAAGGTAAGAAACCTAAAGAATGGGACAAGCAAAAAGAAAAAGCGTATA
CGCAAGCGGCTCCGACCAAAGAGACAACGCCAACGTATACGCCGATGAGA
GCTAAGCTAAAGGGGAATGAACTTCTCCTTTAGTTCCTA
→ BLAST sequence
Predicted 2D structure PDF, PNG

Antitoxin asRNA

Name as-yonT predicted 2D structure (mfold / VARNA)
sRNA structure
Locus_tag NA
Genomic coordinates 2219743-2219843 (strand +)
Length 101 nt
Sequence
(with 50 nt upstream, and -10 box in red; transcript sequence in UPPERCASE)
atgagaatcgtttcatgtttgcaatgtgcttgatcatgttataatatggg
TAGGAACTAAAGGAGAAGTTCATTCCCCTTTAGCTTAGCTCTCATCGGCG
TATACGTTGGCGTTGTCTCTTTGGTCGGAGCCGCTTGCGTATACGCTTTT
T
→ BLAST sequence
Predicted 2D structure PDF, PNG

Toxin Peptide

Name yonT predicted 2D structure (PSIPRED / POLYVIEW-2D)
peptide structurepeptide structure legend

hydrophobicity plot (ProtScale)
peptide hydrophobicity
Locus_tag NA
ORF genomic coordinates 2219784-2219960 (strand -)
ORF length (peptide length) 177 nt (58 aa)
ORF sequence
GTGCTTGAGAAAATGGGTATCGTAGTTGCTTTCCTCATATCTTTAACGGT
TCTTACAATCAACAGTCTAACAATAGTTGAGAAGGTAAGAAACCTAAAGA
ATGGGACAAGCAAAAAGAAAAAGCGTATACGCAAGCGGCTCCGACCAAAG
AGACAACGCCAACGTATACGCCGATGA
→ BLAST sequence
Peptide sequence
VLEKMGIVVAFLISLTVLTINSLTIVEKVRNLKNGTSKKKKRIRKRLRPK
RQRQRIRR*
→ BLAST sequence
Predicted 2D structure PDF, GIF
Hydrophobicity plot PDF, GIF