Locus TA04737

Locus

ID TA04737 genomic context (Gviz / IGV.js)
genomic context
Family txpA/ratA
Organism Bacillus subtilis subtilis str. 168 chromosome
Taxonomy Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus subtilis subsp. subtilis str. 168
Genomic location chromosome
Genomic coordinates 2678192-2678565
Genome accession (GenBank) NC_000964.3
Genome map CGView
Genomic context IGV.js
Upstream gene yqbO : putative tape measure protein; skin element
Within-locus gene BSU_misc_RNA_81 : antisense RNA controlling synthesis of TxpA, membrane associated toxin of a toxin antitoxin system; skin element
txpA : toxic peptide of toxin-antitoxin system; skin element
Downstream gene bsrH : skin region; type I toxin

Toxin mRNA

Name txpA predicted 2D structure (mfold / VARNA)
mRNA structure
Locus_tag NA
Genomic coordinates 2678192-2678461 (strand +)
Length 270 nt
Sequence
(with 50 nt upstream, and -10 box in red; mRNA/asRNA interaction region underlined; toxin ORF in blue; transcript sequence in UPPERCASE)
cattcatactttttgaatgtgctttccatataattcatgtataatagatt
CTTGAAGCTACCTTAGCTTATCCTCCGAATATGAAAGGAGGTGAAATTAT
GTCGACCTATGAATCTCTAATGGTCATGATCGGCTTTGCCAATTTAATAG
GCGGGATTATGACATGGGTAATATCTCTTTTAACATTATTATTCATGCTT
AGAAAAAAAGACACTCATCCTATTTACATTACTGTAAAGGAAAAGTGTCT
ACACGAGGACCCTCCTATTAAAGGGTAGTTTCTTTTTTAAAAGCTAGAGT
GCTGCCACACTCTGGCTTTT
→ BLAST sequence
Predicted 2D structure PDF, PNG

Antitoxin asRNA

Name ratA predicted 2D structure (mfold / VARNA)
sRNA structure
Locus_tag NA
Genomic coordinates 2678344-2678565 (strand -)
Length 222 nt
Sequence
(with 50 nt upstream, and -10 box in red; mRNA/asRNA interaction region underlined; transcript sequence in UPPERCASE)
aaagatacaaataattatataatcaatatatattcatgttataatggtgc
CAAGCAAAAGTATTGCAACTACTGGCGTAAGCTTATAGTTGGTACCACAT
TACCACATTACCACTTGTTAATGTGTGTTACTTTCATGAGAAATGCTAAA
ATATAAAAGCCAGAGTGTGGCAGCACTCTAGCTTTTAAAAAAGAAACTAC
CCTTTAATAGGAGGGTCCTCGTGTAGACACTTTTCCTTTACAGTAATGTA
AATAGGATGAGTGTCTTTTTTT
→ BLAST sequence
Predicted 2D structure PDF, PNG

Toxin Peptide

Name txpA predicted 2D structure (PSIPRED / POLYVIEW-2D)
peptide structurepeptide structure legend

hydrophobicity plot (ProtScale)
peptide hydrophobicity
Locus_tag NA
ORF genomic coordinates 2678240-2678419 (strand +)
ORF length (peptide length) 180 nt (59 aa)
ORF sequence
ATGTCGACCTATGAATCTCTAATGGTCATGATCGGCTTTGCCAATTTAAT
AGGCGGGATTATGACATGGGTAATATCTCTTTTAACATTATTATTCATGC
TTAGAAAAAAAGACACTCATCCTATTTACATTACTGTAAAGGAAAAGTGT
CTACACGAGGACCCTCCTATTAAAGGGTAG
→ BLAST sequence
Peptide sequence
MSTYESLMVMIGFANLIGGIMTWVISLLTLLFMLRKKDTHPIYITVKEKC
LHEDPPIKG*
→ BLAST sequence
Predicted 2D structure PDF, GIF
Hydrophobicity plot PDF, GIF