Locus TA04736

Locus

ID TA04736 genomic context (Gviz / IGV.js)
genomic context
Family BsrH/as-BsrH
Organism Bacillus subtilis subtilis str. 168 chromosome
Taxonomy Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus subtilis subsp. subtilis str. 168
Genomic location chromosome
Genomic coordinates 2678730-2679077
Genome accession (GenBank) NC_000964.3
Genome map CGView
Genomic context IGV.js
Upstream gene BSU_misc_RNA_81 : antisense RNA controlling synthesis of TxpA, membrane associated toxin of a toxin antitoxin system; skin element
Within-locus gene bsrH : skin region; type I toxin
BSU_misc_RNA_92 : antitoxin RNA
Downstream gene yqbM : putative tail tube protein; skin element

Toxin mRNA

Name bsrH predicted 2D structure (mfold / VARNA)
mRNA structure
Locus_tag NA
Genomic coordinates 2678730-2679014 (strand +)
Length 285 nt
Sequence
(with 50 nt upstream, and -10 box in red; mRNA/asRNA interaction region underlined; toxin ORF in blue; transcript sequence in UPPERCASE)
cttttattaaaaaccctcggattatgaaagtgttatggtacaatatggtt
TAGTATAAATGAATATTGGCTTTCAACATCTCAAGGGCGGTCTGGCTCAC
TCCCTCATGAAAGGGGGTGATGCACGTGTCAACATTTCAAGCATTAATGC
TTATGCTTGCTTTCGGGTCATTTATAATTGCCCTGTTGACTTATATAAAG
AAGAAATAGACCCACCCCTTGAGCTCGGCAAAGTAAAAGGGTAAAGTCTA
TCCTAAATACTTTCATGAAGTTGTTAAGCCAGCCCTCTTGATGGGCCAAC
ATTTATACTGACCCGGCGGCAACCGGGTCTCTTTT
→ BLAST sequence
Predicted 2D structure PDF, PNG

Antitoxin asRNA

Name as-bsrH predicted 2D structure (mfold / VARNA)
sRNA structure
Locus_tag NA
Genomic coordinates 2678876-2679077 (strand -)
Length 202 nt
Sequence
(with 50 nt upstream, and -10 box in red; mRNA/asRNA interaction region underlined; transcript sequence in UPPERCASE)
aatcgccgactttaacgaagatatttacgaaaaaatgtggtaagattact
TTAGAAGTAATTCAACCGTACCAAATGGAAACATGTATTTCTTTCAAAAG
AAATGCATAAAATAAAAGAGACCCGGTTGCCGCCGGGTCAGTATAAATGT
TGGCCCATCAAGAGGGCTGGCTTAACAACTTCATGAAAGTATTTAGGATA
GACTTTACCCTTTTACTTTGCCGAGCTCAAGGGGTGGGTCTATTTCTTCT
TT
→ BLAST sequence
Predicted 2D structure PDF, PNG

Toxin Peptide

Name bsrH predicted 2D structure (PSIPRED / POLYVIEW-2D)
peptide structurepeptide structure legend

hydrophobicity plot (ProtScale)
peptide hydrophobicity
Locus_tag NA
ORF genomic coordinates 2678799-2678888 (strand +)
ORF length (peptide length) 90 nt (29 aa)
ORF sequence
ATGCACGTGTCAACATTTCAAGCATTAATGCTTATGCTTGCTTTCGGGTC
ATTTATAATTGCCCTGTTGACTTATATAAAGAAGAAATAG
→ BLAST sequence
Peptide sequence
MHVSTFQALMLMLAFGSFIIALLTYIKKK*
→ BLAST sequence
Predicted 2D structure PDF, GIF
Hydrophobicity plot PDF, GIF