Locus TA04735

Locus

ID TA04735 genomic context (Gviz / IGV.js)
genomic context
Family BsrG/as-BsrG
Organism Bacillus subtilis subtilis str. 168 chromosome
Taxonomy Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus subtilis subsp. subtilis str. 168
Genomic location chromosome
Genomic coordinates 2273534-2273884
Genome accession (GenBank) NC_000964.3
Genome map CGView
Genomic context IGV.js
Upstream gene yolA : conserved exported protein of unknown function; SPbeta phage
Within-locus gene bsrG : phage toxin; type I toxin-antitoxin system
BSU_misc_RNA_77 : antitoxin small RNA
Downstream gene yokL : putative N-acetyltransferase; phage SPbeta

Toxin mRNA

Name bsrG predicted 2D structure (mfold / VARNA)
mRNA structure
Locus_tag NA
Genomic coordinates 2273534-2273827 (strand +)
Length 294 nt
Sequence
(with 50 nt upstream, and -10 box in red; mRNA/asRNA interaction region underlined; toxin ORF in blue; transcript sequence in UPPERCASE)
attgtgaatttttaacgacaaggacatttatgtatagtataatatttcct
GTACATAAAGTTTGCTCACTCAAGGGAGTCTTGCTCATCCCCTATGAAAG
GGGTGGGAAAATGACTGTTTACGAATCATTAATGATAATGATCAATTTTG
GCGGATTGATATTAAATACCGTCTTGTTGATCTTCAATATAATGATGATT
GTAACGTCAAGCCAAAAGAAAAAATAGACCTTCCCTTGAGTTTGGACACC
TGAAGGGTTAGGCCTACGCAGATTTGACAACGAGCAAGCCCTTTGATGGG
CAGCTTTTGTACAGAGCCAGGGTGCTACCAACACCCTGGTCTTT
→ BLAST sequence
Predicted 2D structure PDF, PNG

Antitoxin asRNA

Name as-bsrG predicted 2D structure (mfold / VARNA)
sRNA structure
Locus_tag NA
Genomic coordinates 2273705-2273884 (strand -)
Length 180 nt
Sequence
(with 50 nt upstream, and -10 box in red; mRNA/asRNA interaction region underlined; transcript sequence in UPPERCASE)
accaagcaatagtattgcaaataccatttttatatggttataattagggt
AATGATACAATTATATAATTATTTTTTGCATTTTGTTTAATTAAATGCAT
AAAATAAAAAGACCAGGGTGTTGGTAGCACCCTGGCTCTGTACAAAAGCT
GCCCATCAAAGGGCTTGCTCGTTGTCAAATCTGCGTAGGCCTAACCCTTC
AGGTGTCCAAACTCAAGGGAAGGTCTATTT
→ BLAST sequence
Predicted 2D structure PDF, PNG

Toxin Peptide

Name bsrG predicted 2D structure (PSIPRED / POLYVIEW-2D)
peptide structurepeptide structure legend

hydrophobicity plot (ProtScale)
peptide hydrophobicity
Locus_tag NA
ORF genomic coordinates 2273594-2273710 (strand +)
ORF length (peptide length) 117 nt (38 aa)
ORF sequence
ATGACTGTTTACGAATCATTAATGATAATGATCAATTTTGGCGGATTGAT
ATTAAATACCGTCTTGTTGATCTTCAATATAATGATGATTGTAACGTCAA
GCCAAAAGAAAAAATAG
→ BLAST sequence
Peptide sequence
MTVYESLMIMINFGGLILNTVLLIFNIMMIVTSSQKKK*
→ BLAST sequence
Predicted 2D structure PDF, GIF
Hydrophobicity plot PDF, GIF