Locus TA04734
Locus
| ID | TA04734 |
genomic context (Gviz / IGV.js)
|
| Family | BsrE/as-BsrE | |
| Organism | Bacillus subtilis subtilis str. 168 chromosome | |
| Taxonomy | Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus subtilis subsp. subtilis str. 168 | |
| Genomic location | chromosome | |
| Genomic coordinates | 2069822-2070129 | |
| Genome accession (GenBank) | NC_000964.3 | |
| Genome map | CGView | |
| Genomic context | IGV.js | |
| Upstream gene | BSU_misc_RNA_74 : small regulatory antitoxin RNA, toxin-antitoxin type I system (BsrE/AsrE) | |
| Within-locus gene | bsrE : type I toxin (BsrE/AsrE) | |
| Downstream gene | yobJ : conserved protein of unknown function; putative defective prophage 6 |
Toxin mRNA
| Name | bsrE |
predicted 2D structure (mfold / VARNA)
|
| Locus_tag | NA | |
| Genomic coordinates | 2069822-2070083 (strand +) | |
| Length | 262 nt | |
| Sequence (with 50 nt upstream, and -10 box in red; mRNA/asRNA interaction region underlined; toxin ORF in blue; transcript sequence in UPPERCASE) |
ttgtgaatttttaacgacaagggcatttatgtatagtatgatatttcctg
→ BLAST sequence
TACAGTAAGTTTTGCTCACTCGAGGGAGTCTTGCTCATCCCCTAATGAAA GGGGTGATGCTATGTCAACATTCCAGGCATTAATGCTAATGCTTGCAATC GGGTCGTTTATAATCGCCCTATTGACGTATATAGAAAAAATAGACCTCCC TTGAGCCTCAGAACCTGAAGGGATAGGCCTACCTAGAACCACATCGAGCA AGCCCTTTGATGGGCAACTTTTTGTACAGAGCCGGGGTGTTGGTAGCACC TCGGTCTTTTTT |
|
| Predicted 2D structure | PDF, PNG |
Antitoxin asRNA
| Name | as-bsrE |
predicted 2D structure (mfold / VARNA)
|
| Locus_tag | NA | |
| Genomic coordinates | 2069956-2070129 (strand -) | |
| Length | 174 nt | |
| Sequence (with 50 nt upstream, and -10 box in red; mRNA/asRNA interaction region underlined; transcript sequence in UPPERCASE) |
tcttgaggtttattgtaatgcatttcacggaaaatgtgttataatcagtt
→ BLAST sequence
TTACAATACATTACAGTGCATTTCTTTAATGAGAAATGCATAAAATAAAA AAGACCGAGGTGCTACCAACACCCCGGCTCTGTACAAAAAGTTGCCCATC AAAGGGCTTGCTCGATGTGGTTCTAGGTAGGCCTATCCCTTCAGGTTCTG AGGCTCAAGGGAGGTCTATTTTTT |
|
| Predicted 2D structure | PDF, PNG |
Toxin Peptide
| Name | bsrE |
predicted 2D structure (PSIPRED / POLYVIEW-2D)
 
hydrophobicity plot (ProtScale) 
|
| Locus_tag | NA | |
| ORF genomic coordinates | 2069883-2069975 (strand +) | |
| ORF length (peptide length) | 93 nt (30 aa) | |
| ORF sequence |
ATGTCAACATTCCAGGCATTAATGCTAATGCTTGCAATCGGGTCGTTTAT
→ BLAST sequence
AATCGCCCTATTGACGTATATAGAAAAAATAGACCTCCCTTGA |
|
| Peptide sequence |
MSTFQALMLMLAIGSFIIALLTYIEKIDLP*
→ BLAST sequence
|
|
| Predicted 2D structure | PDF, GIF | |
| Hydrophobicity plot | PDF, GIF |
