Locus TA03831

Locus

ID TA03831 genomic context (Gviz / IGV.js)
genomic context
Family AapC/IsoC
Organism Helicobacter pylori 26695 chromosome
Taxonomy Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; Helicobacter pylori 26695
Genomic location chromosome
Genomic coordinates 1071907-1072099
Genome accession (GenBank) NC_000915.1
Genome map CGView
Genomic context IGV.js
Upstream gene HP_RS04955 : tyrosine-type recombinase/integrase
Downstream gene HP_RS04960 : tRNA-Pro

Toxin mRNA

Name AapC predicted 2D structure (mfold / VARNA)
mRNA structure
Locus_tag
Genomic coordinates 1071907-1072099 (strand -)
Length 193 nt
Sequence
(with 50 nt upstream, and -10 box in red; mRNA/asRNA interaction region underlined; toxin ORF in blue; transcript sequence in UPPERCASE)
cttaaaatttttttagcgttttttgggttgattgtttctataataaacgg
ACGCAAGTAGTAATCTCTTGGTTTTCTCTTTGGTTGCGGTATTTGGAGTA
TGTTAGGGTTGGGGGTAATAGTGGGTGGTTACCTCAGAAAAGGAGATAAC
CTAACATGAGATTAGTAATCATAGTTTTAATGGTATCCGCAACGCCATTA
TACTAAAATTTTGGCTCTAGCGCAAGAGCGCTAGGGTCAAATC
→ BLAST sequence
Predicted 2D structure PDF, PNG

Antitoxin asRNA

Name IsoC predicted 2D structure (mfold / VARNA)
sRNA structure
Locus_tag
Genomic coordinates 1071960-1072031 (strand +)
Length 72 nt
Sequence
(with 50 nt upstream, and -10 box in red; transcript sequence in UPPERCASE)
ttgaccctagcgctcttgcgctagagccaaaattttagtataatggcgtt
GCGGATACCATTAAAACTATGATTACTAATCTCATGTTAGGTTATCTCCT
TTTCTGAGGTAACCACCCACTA
→ BLAST sequence
Predicted 2D structure PDF, PNG

Toxin Peptide

Name AapC predicted 2D structure (PSIPRED / POLYVIEW-2D)
peptide structurepeptide structure legend

hydrophobicity plot (ProtScale)
peptide hydrophobicity
Locus_tag
ORF genomic coordinates 1071944-1071994 (strand -)
ORF length (peptide length) 51 nt (16 aa)
ORF sequence
ATGAGATTAGTAATCATAGTTTTAATGGTATCCGCAACGCCATTATACTA
A
→ BLAST sequence
Peptide sequence
MRLVIIVLMVSATPLY*
→ BLAST sequence
Predicted 2D structure PDF, GIF
Hydrophobicity plot PDF, GIF