Locus TA03830

Locus

ID TA03830 genomic context (Gviz / IGV.js)
genomic context
Family AapD/IsoD
Organism Helicobacter pylori 26695 chromosome
Taxonomy Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; Helicobacter pylori 26695
Genomic location chromosome
Genomic coordinates 964702-964869
Genome accession (GenBank) NC_000915.1
Genome map CGView
Genomic context IGV.js
Upstream gene HP_RS04450 : ATP-dependent helicase
Downstream gene alpA : Hop family adhesin AlpA

Toxin mRNA

Name AapD predicted 2D structure (mfold / VARNA)
mRNA structure
Locus_tag
Genomic coordinates 964702-964869 (strand -)
Length 168 nt
Sequence
(with 50 nt upstream, and -10 box in red; mRNA/asRNA interaction region underlined; toxin ORF in blue; transcript sequence in UPPERCASE)
tttaaaaacgctttttggcattctttggttttttaatgtaaaatcacgcc
AAAGCAAATAGTCATTTCTAGGTTTCTCTTTTGTTGTGAAAATTTGGAGC
ATGTTAGGGTCTAATAGTGGGTGGTTACCCCGAAAGGAGATAACCAACTA
TGAAGTTATTATTAGTAACAACGCCATTATACTAAAATTTTGGCTCTAGC
ACAAGCTAGAGCTAAAAT
→ BLAST sequence
Predicted 2D structure PDF, PNG

Antitoxin asRNA

Name IsoD predicted 2D structure (mfold / VARNA)
sRNA structure
Locus_tag
Genomic coordinates 964751-964802 (strand +)
Length 52 nt
Sequence
(with 50 nt upstream, and -10 box in red; transcript sequence in UPPERCASE)
gattttagctctagcttgtgctagagccaaaattttagtataatggcgtt
GTTACTAATAATAACTTCATAGTTGGTTATCTCCTTTCGGGGTAACCACC
CA
→ BLAST sequence
Predicted 2D structure PDF, PNG

Toxin Peptide

Name AapD predicted 2D structure (PSIPRED / POLYVIEW-2D)
peptide structurepeptide structure legend

hydrophobicity plot (ProtScale)
peptide hydrophobicity
Locus_tag
ORF genomic coordinates 964735-964770 (strand -)
ORF length (peptide length) 36 nt (11 aa)
ORF sequence
ATGAAGTTATTATTAGTAACAACGCCATTATACTAA
→ BLAST sequence
Peptide sequence
MKLLLVTTPLY*
→ BLAST sequence
Predicted 2D structure PDF, GIF
Hydrophobicity plot PDF, GIF