Locus TA03829

Locus

ID TA03829 genomic context (Gviz / IGV.js)
genomic context
Family AapB/IsoB
Organism Helicobacter pylori 26695 chromosome
Taxonomy Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; Helicobacter pylori 26695
Genomic location chromosome
Genomic coordinates 865495-865716
Genome accession (GenBank) NC_000915.1
Genome map CGView
Genomic context IGV.js
Upstream gene HP_RS03950 : hypothetical protein
Downstream gene HP_RS03955 : class I SAM-dependent methyltransferase

Toxin mRNA

Name AapB predicted 2D structure (mfold / VARNA)
mRNA structure
Locus_tag
Genomic coordinates 865495-865716 (strand -)
Length 222 nt
Sequence
(with 50 nt upstream, and -10 box in red; mRNA/asRNA interaction region underlined; toxin ORF in blue; transcript sequence in UPPERCASE)
tggagaatattaaacactaaatatttactatgaaacactacgctttcaag
GTTAGTTTGCGTGAAAAGTTGAGAGGGGCTAACTTGCTTTCTCAATTAAG
GTAAGAGCGTCAGGACATTTTAATGAAAAAGTTGATTAAAATGCTAAGTT
ATAGTAAAGAAAGAAGGAATATAATACGCCTTTCGCTCTTACCTTCGCCG
AGCATTATACCAAAAAAAAAAAAAACGATGTTATTTGAACTTTATTTTTA
ACATTCTGTTTTTCTTTTTTAT
→ BLAST sequence
Predicted 2D structure PDF, PNG

Antitoxin asRNA

Name IsoB predicted 2D structure (mfold / VARNA)
sRNA structure
Locus_tag
Genomic coordinates 865570-865671 (strand +)
Length 102 nt
Sequence
(with 50 nt upstream, and -10 box in red; transcript sequence in UPPERCASE)
aaataaagttcaaataacatcgttttttttttttttggtataatgctcgg
CGAAGGTAAGAGCGAAAGGCGTATTATATTCCTTCTTTCTTTACTATAAC
TTAGCATTTTAATCAACTTTTTCATTAAAATGTCCTGACGCTCTTACCTT
AA
→ BLAST sequence
Predicted 2D structure PDF, PNG

Toxin Peptide

Name AapB predicted 2D structure (PSIPRED / POLYVIEW-2D)
peptide structurepeptide structure legend

hydrophobicity plot (ProtScale)
peptide hydrophobicity
Locus_tag
ORF genomic coordinates 865516-865644 (strand -)
ORF length (peptide length) 129 nt (42 aa)
ORF sequence
ATGAAAAAGTTGATTAAAATGCTAAGTTATAGTAAAGAAAGAAGGAATAT
AATACGCCTTTCGCTCTTACCTTCGCCGAGCATTATACCAAAAAAAAAAA
AAACGATGTTATTTGAACTTTATTTTTAA
→ BLAST sequence
Peptide sequence
MKKLIKMLSYSKERRNIIRLSLLPSPSIIPKKKKTMLFELYF*
→ BLAST sequence
Predicted 2D structure PDF, GIF
Hydrophobicity plot PDF, GIF