Locus TA03827

Locus

ID TA03827 genomic context (Gviz / IGV.js)
genomic context
Family CD/RCd
Organism Clostridioides difficile 630
Taxonomy Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Clostridioides; Clostridioides difficile 630
Genomic location chromosome
Genomic coordinates 3398292-3398599
Genome accession (GenBank) NC_009089.1
Genome map CGView
Genomic context IGV.js
Upstream gene
Within-locus gene CD630_RS19840 : hypothetical protein
Downstream gene CD630_RS15530 : phage portal protein

Toxin mRNA

Name CD2907.1 predicted 2D structure (mfold / VARNA)
mRNA structure
Locus_tag
Genomic coordinates 3398292-3398599 (strand -)
Length 308 nt
Sequence
(with 50 nt upstream, and -10 box in red; mRNA/asRNA interaction region underlined; toxin ORF in blue; transcript sequence in UPPERCASE)
taaatatagaataggtaaaatatgtaataattatatgttataatattttt
AGCAAGAAGATGTAATCTACAATTTATAGAGTGGAGTTCATACTGGGATA
AAACCTACTTCCTAATGAAAGGAGGTGGGAAGTATGAATAACTTTTTACT
TAATGTAATAGCTGGCGTTATTGCTAGTTTAATATTTTGCTTAATTTGTA
AAGTATTTCTAAAAGTAAAAAGCCACTCAACTCGTGGCAAGAGTAAAAGT
GGCTGGGAATTTGATTTTAAAATCAAGTTCCATAAGTTCAAATAGATTCA
TTTAATTATGAACTTCACTCTACCGCAAAATAGATTGTAGTTCTTCTTGC
TTTTATTA
→ BLAST sequence
Predicted 2D structure PDF, PNG

Antitoxin asRNA

Name RCd9 predicted 2D structure (mfold / VARNA)
sRNA structure
Locus_tag
Genomic coordinates 3398302-3398435 (strand +)
Length 134 nt
Sequence
(with 50 nt upstream, and -10 box in red; transcript sequence in UPPERCASE)
ttttattttatataaacaatattttttctaatttgtggtataataaaagc
AAGAAGAACTACAATCTATTTTGCGGTAGAGTGAAGTTCATAATTAAATG
AATCTATTTGAACTTATGGAACTTGATTTTAAAATCAAATTCCCAGCCAC
TTTTACTCTTGCCACGAGTTGAGTGGCTTTTTAC
→ BLAST sequence
Predicted 2D structure PDF, PNG

Toxin Peptide

Name CD2907.1 predicted 2D structure (PSIPRED / POLYVIEW-2D)
peptide structurepeptide structure legend

hydrophobicity plot (ProtScale)
peptide hydrophobicity
Locus_tag
ORF genomic coordinates 3398355-3398516 (strand -)
ORF length (peptide length) 162 nt (53 aa)
ORF sequence
ATGAATAACTTTTTACTTAATGTAATAGCTGGCGTTATTGCTAGTTTAAT
ATTTTGCTTAATTTGTAAAGTATTTCTAAAAGTAAAAAGCCACTCAACTC
GTGGCAAGAGTAAAAGTGGCTGGGAATTTGATTTTAAAATCAAGTTCCAT
AAGTTCAAATAG
→ BLAST sequence
Peptide sequence
MNNFLLNVIAGVIASLIFCLICKVFLKVKSHSTRGKSKSGWEFDFKIKFH
KFK*
→ BLAST sequence
Predicted 2D structure PDF, GIF
Hydrophobicity plot PDF, GIF