Locus TA03824

Locus

ID TA03824 genomic context (Gviz / IGV.js)
genomic context
Family CD/RCd
Organism Clostridioides difficile 630
Taxonomy Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Clostridioides; Clostridioides difficile 630
Genomic location chromosome
Genomic coordinates 1644677-1644968
Genome accession (GenBank) NC_009089.1
Genome map CGView
Genomic context IGV.js
Upstream gene
Within-locus gene CD630_RS19720 : hypothetical protein
Downstream gene

Toxin mRNA

Name CD1418.2 predicted 2D structure (mfold / VARNA)
mRNA structure
Locus_tag
Genomic coordinates 1644677-1644968 (strand +)
Length 292 nt
Sequence
(with 50 nt upstream, and -10 box in red; mRNA/asRNA interaction region underlined; toxin ORF in blue; transcript sequence in UPPERCASE)
aaagtaatatataggtaaaatatgtaagaattatatgctataacattttt
AGCAAGAAGATGTAATCTACAATTTATAGAGTGGAGTTCATACAAAAGAT
TATCCTCCCAATGTATAGAAGGGAGGTGAGTATGTATGGATAATTTTTTA
CAAGGTGTACTAGCAAGTTTAGTTGCCAGTTTAATAGTTTACTTAAATAG
TAAATTGTTTAAAAAAGTAAAAAGCCACTCTGGCAGGAGTGACTTTAGTT
TTGAACTAAAAATCAAGTTCAAAAAGAATAAACATTAGTATTTGAACTTC
ACTCTACGTCTAAATAGATTGTAGTTCTTCTTGTTTTTATTA
→ BLAST sequence
Predicted 2D structure PDF, PNG

Antitoxin asRNA

Name CD630_n00500 predicted 2D structure (mfold / VARNA)
sRNA structure
Locus_tag
Genomic coordinates 1644858-1644958 (strand -)
Length 101 nt
Sequence
(with 50 nt upstream, and -10 box in red; transcript sequence in UPPERCASE)
taaatatattatttttgaatatctgtaccaatttgtggtataataaaaac
AAGAAGAACTACAATCTATTTAGACGTAGAGTGAAGTTCAAATACTAATG
TTTATTCTTTTTGAACTTGATTTTTAGTTCAAAACTAAAGTCACTCCTGC
C
→ BLAST sequence
Predicted 2D structure PDF, PNG

Toxin Peptide

Name CD1418.2 predicted 2D structure (PSIPRED / POLYVIEW-2D)
peptide structurepeptide structure legend

hydrophobicity plot (ProtScale)
peptide hydrophobicity
Locus_tag
ORF genomic coordinates 1644762-1644914 (strand +)
ORF length (peptide length) 153 nt (50 aa)
ORF sequence
ATGGATAATTTTTTACAAGGTGTACTAGCAAGTTTAGTTGCCAGTTTAAT
AGTTTACTTAAATAGTAAATTGTTTAAAAAAGTAAAAAGCCACTCTGGCA
GGAGTGACTTTAGTTTTGAACTAAAAATCAAGTTCAAAAAGAATAAACAT
TAG
→ BLAST sequence
Peptide sequence
MDNFLQGVLASLVASLIVYLNSKLFKKVKSHSGRSDFSFELKIKFKKNKH
*
→ BLAST sequence
Predicted 2D structure PDF, GIF
Hydrophobicity plot PDF, GIF