Locus TA03823

Locus

ID TA03823 genomic context (Gviz / IGV.js)
genomic context
Family CD/RCd
Organism Clostridioides difficile 630
Taxonomy Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Clostridioides; Clostridioides difficile 630
Genomic location chromosome
Genomic coordinates 1433865-1434165
Genome accession (GenBank) NC_009089.1
Genome map CGView
Genomic context IGV.js
Upstream gene CD630_RS06850 : cell wall-binding protein Cwp26
Downstream gene CD630_RS06850 : cell wall-binding protein Cwp26

Toxin mRNA

Name CD1233.1 predicted 2D structure (mfold / VARNA)
mRNA structure
Locus_tag
Genomic coordinates 1433865-1434165 (strand +)
Length 301 nt
Sequence
(with 50 nt upstream, and -10 box in red; mRNA/asRNA interaction region underlined; toxin ORF in blue; transcript sequence in UPPERCASE)
aacaagtgtttttaattatataatttgccataatatgttataatattttt
AGCAAGAAGATTTAACTTACAATCTATAGAGTGGAGTTCATGTACAAAAG
ATTATCCTCCCAACGATTCGAAGGGAGGTGAGTTCATGGATAACTTTTTG
TTTAATGTTTTAGCTAGTTTAACAGCTAGTGTGGTAGTTTACTTAATCAG
TAAACTATTCAAAAAAGCAAAAAGCCACTCTCGCACAAAGAGTGACTTAC
GAGTTGAATTTAAATTTATATTTAAATCCAAAAAATAAACTCTGTTTATG
ATGAACTCCACTCTAACGCAAAATAGATTGTAGTTCTTCTTGCTTTTATT
A
→ BLAST sequence
Predicted 2D structure PDF, PNG

Antitoxin asRNA

Name SQ808 predicted 2D structure (mfold / VARNA)
sRNA structure
Locus_tag
Genomic coordinates 1434082-1434155 (strand -)
Length 74 nt
Sequence
(with 50 nt upstream, and -10 box in red; transcript sequence in UPPERCASE)
tttttataaacaacagttttatttataatgttttgtggtataataaaagc
AAGAAGAACTACAATCTATTTTGCGTTAGAGTGGAGTTCATCATAAACAG
AGTTTATTTTTTGGATTTAAATAT
→ BLAST sequence
Predicted 2D structure PDF, PNG

Toxin Peptide

Name CD1233.1 predicted 2D structure (PSIPRED / POLYVIEW-2D)
peptide structurepeptide structure legend

hydrophobicity plot (ProtScale)
peptide hydrophobicity
Locus_tag
ORF genomic coordinates 1433950-1434102 (strand +)
ORF length (peptide length) 153 nt (50 aa)
ORF sequence
ATGGATAACTTTTTGTTTAATGTTTTAGCTAGTTTAACAGCTAGTGTGGT
AGTTTACTTAATCAGTAAACTATTCAAAAAAGCAAAAAGCCACTCTCGCA
CAAAGAGTGACTTACGAGTTGAATTTAAATTTATATTTAAATCCAAAAAA
TAA
→ BLAST sequence
Peptide sequence
MDNFLFNVLASLTASVVVYLISKLFKKAKSHSRTKSDLRVEFKFIFKSKK
*
→ BLAST sequence
Predicted 2D structure PDF, GIF
Hydrophobicity plot PDF, GIF