Locus TA03808

Locus

ID TA03808 genomic context (Gviz / IGV.js)
genomic context
Family sprA1/sprA1as
Organism Staphylococcus aureus aureus str. Newman DNA
Taxonomy Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; Staphylococcus; Staphylococcus aureus subsp. aureus str. Newman
Genomic location chromosome
Genomic coordinates 1889597-1889829
Genome accession (GenBank) NC_009641.1
Genome map CGView
Genomic context IGV.js
Upstream gene NWMN_RS09520 : transposase
Within-locus gene pepA1 : type I toxin-antitoxin system Fst family toxin PepA1
Downstream gene NWMN_RS09525 : hypothetical protein

Toxin mRNA

Name sprA1 predicted 2D structure (mfold / VARNA)
mRNA structure
Locus_tag
Genomic coordinates 1889597-1889804 (strand +)
Length 208 nt
Sequence
(with 50 nt upstream, and -10 box in red; mRNA/asRNA interaction region underlined; toxin ORF in blue; transcript sequence in UPPERCASE)
tcagaagcaagtgactgtgcttgtatatttgccgatgatataatagtaga
GTCGCCTATCTCTCAGGCGTCAATTTAGACGCAGAGAGGAGGTGTATAAG
GTGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGC
CATTGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAGGTGA
CATATAGCCGCACCAATAAAAATCCCCTCACTACCGCAAATAGTGAGGGG
ATTGGTGT
→ BLAST sequence
Predicted 2D structure PDF, PNG

Antitoxin asRNA

Name sprA1as predicted 2D structure (mfold / VARNA)
sRNA structure
Locus_tag
Genomic coordinates 1889770-1889829 (strand -)
Length 60 nt
Sequence
(with 50 nt upstream, and -10 box in red; mRNA/asRNA interaction region underlined; transcript sequence in UPPERCASE)
tttaaaaccttgcatattttacaaaaagaaaaattagcagtataattaag
ACAACGAAAATAAGTATTTACTTATACACCAATCCCCTCACTATTTGCGG
TAGTGAGGGG
→ BLAST sequence
Predicted 2D structure PDF, PNG

Toxin Peptide

Name sprA1 predicted 2D structure (PSIPRED / POLYVIEW-2D)
peptide structurepeptide structure legend

hydrophobicity plot (ProtScale)
peptide hydrophobicity
Locus_tag
ORF genomic coordinates 1889650-1889742 (strand +)
ORF length (peptide length) 93 nt (30 aa)
ORF sequence
ATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCAT
TGCGTTTTTTTCTTATTGGCTAAGTAGACGCAATACAAAATAG
→ BLAST sequence
Peptide sequence
MLIFVHIIAPVISGCAIAFFSYWLSRRNTK*
→ BLAST sequence
Predicted 2D structure PDF, GIF
Hydrophobicity plot PDF, GIF