Locus TA03807
Locus
| ID | TA03807 |
genomic context (Gviz / IGV.js)
|
| Family | sprG/sprF | |
| Organism | Staphylococcus aureus aureus N315 DNA | |
| Taxonomy | Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; Staphylococcus; Staphylococcus aureus subsp. aureus N315 | |
| Genomic location | chromosome | |
| Genomic coordinates | 1006440-1006849 | |
| Genome accession (GenBank) | NC_002745.2 | |
| Genome map | CGView | |
| Genomic context | IGV.js | |
| Upstream gene | SA_RS15370 : hypothetical protein | |
| Downstream gene | SA_RS05025 : hypothetical protein |
Toxin mRNA
| Name | sprG4 |
predicted 2D structure (mfold / VARNA)
|
| Locus_tag | ||
| Genomic coordinates | 1006440-1006808 (strand +) | |
| Length | 369 nt | |
| Sequence (with 50 nt upstream; mRNA/asRNA interaction region underlined; toxin ORF in blue; transcript sequence in UPPERCASE) |
gacatagaatgatggttaaagaaaatctcatttagtcaccgtctttttaa
→ BLAST sequence
CGGGCTCATTAGGCGACATGTTCCTGCATGTCGTCTTTTTACATTTTTAT AGTAACATATCTTTTATTTAATTGTCTATTTTTATTAGATGTGTAACAAA ATTTTGAAGTATTTTCCGTATATTGCCTGCTAAACATGTCAGATTTGAAA GGAAAATCATACTGTGGTAGAAATCAATTATGATTATATGGTAGTACTTA TAAATAAGTGATTTCTATTGAATATGTAATGAAGTTCATATATTAATATA ACTTTCATTGATATAGAAGTCGCAATGATTAATTTAAACAATAAAAAACA ACCATCATTTCAAAACTTTGACAACGAATGATGGTTAAAGAAAATCTCAT TTAGTCACCGTCTTTTTAA |
|
| Predicted 2D structure | PDF, PNG |
Antitoxin asRNA
| Name | sprF4 |
predicted 2D structure (mfold / VARNA)
|
| Locus_tag | ||
| Genomic coordinates | 1006735-1006849 (strand -) | |
| Length | 115 nt | |
| Sequence (with 50 nt upstream, and -10 box in red; mRNA/asRNA interaction region underlined; transcript sequence in UPPERCASE) |
ttaaatggacatcaaagtataattgtattattgttaaattgcgcagtgca
→ BLAST sequence
TAAATAGACGACATGCAGGAACATGTCCCCTATTGAACCCGTTAAAAAGA CGGTGACTAAATGAGATTTTCTTTAACCATCATTCGTTGTCAAAGTTTTG AAATGATGGTTGTTT |
|
| Predicted 2D structure | PDF, PNG |
Toxin Peptide
| Name | sprG4 |
predicted 2D structure (PSIPRED / POLYVIEW-2D)
 
hydrophobicity plot (ProtScale) 
|
| Locus_tag | ||
| ORF genomic coordinates | 1006714-1006770 (strand +) | |
| ORF length (peptide length) | 57 nt (18 aa) | |
| ORF sequence |
ATGATTAATTTAAACAATAAAAAACAACCATCATTTCAAAACTTTGACAA
→ BLAST sequence
CGAATGA |
|
| Peptide sequence |
MINLNNKKQPSFQNFDNE*
→ BLAST sequence
|
|
| Predicted 2D structure | PDF, GIF | |
| Hydrophobicity plot | PDF, GIF |
