Locus TA03806

Locus

ID TA03806 genomic context (Gviz / IGV.js)
genomic context
Family sprG/sprF
Organism Staphylococcus aureus aureus N315 DNA
Taxonomy Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; Staphylococcus; Staphylococcus aureus subsp. aureus N315
Genomic location chromosome
Genomic coordinates 2206386-2206708
Genome accession (GenBank) NC_002745.2
Genome map CGView
Genomic context IGV.js
Upstream gene SA_RS11225 : transcriptional regulator
Within-locus gene SA_RS11230 : hypothetical protein
SA_RS15420 : hypothetical protein
Downstream gene SA_RS14875 : hypothetical protein

Toxin mRNA

Name sprG3 predicted 2D structure (mfold / VARNA)
mRNA structure
Locus_tag
Genomic coordinates 2206529-2206708 (strand -)
Length 180 nt
Sequence
(with 50 nt upstream, and -10 box in red; mRNA/asRNA interaction region underlined; toxin ORF in blue; transcript sequence in UPPERCASE)
acttatactatgaattactgtttaaaagtgtgcatgttataatatttatt
GAGCAAGTTGGATAGATGGTGGCTAATCTCTTAATAAAGGGGTGATGCCT
ATGGTTATAGTTGTTACTCCTAGAAAGGACTAGCATGTCTGATTTTGAAA
TGCTGATGGTTGTATTAACAATCATTGGTTTAGTATTGATTAGTACTCAA
GACCATAAAAAATAACCTTCTATTCGCTTT
→ BLAST sequence
Predicted 2D structure PDF, PNG

Antitoxin asRNA

Name sprF3 predicted 2D structure (mfold / VARNA)
sRNA structure
Locus_tag
Genomic coordinates 2206386-2206549 (strand +)
Length 164 nt
Sequence
(with 50 nt upstream, and -10 box in red; mRNA/asRNA interaction region underlined; transcript sequence in UPPERCASE)
gattatgttcagaactacaattcataagaaaaatgtgttaaaatatattt
GTAGTAAGTAGAAGCAAAAGATGAAAATCTTTAACTCTTGAAACACAAAA
AGGGCAACACTCGGAAACATGTTACCCTAATGAGCCCGTTAAAAAGACGG
TGACCTTATATTTTATTTAAAAATAGCCTTCAAAATGCCGGTCAAAGCGA
ATAGAAGGTTATTT
→ BLAST sequence
Predicted 2D structure PDF, PNG

Toxin Peptide

Name sprG3 predicted 2D structure (PSIPRED / POLYVIEW-2D)
peptide structurepeptide structure legend

hydrophobicity plot (ProtScale)
peptide hydrophobicity
Locus_tag
ORF genomic coordinates 2206544-2206624 (strand -)
ORF length (peptide length) 81 nt (26 aa)
ORF sequence
ATGTCTGATTTTGAAATGCTGATGGTTGTATTAACAATCATTGGTTTAGT
ATTGATTAGTACTCAAGACCATAAAAAATAA
→ BLAST sequence
Peptide sequence
MSDFEMLMVVLTIIGLVLISTQDHKK*
→ BLAST sequence
Predicted 2D structure PDF, GIF
Hydrophobicity plot PDF, GIF