Locus TA03805

Locus

ID TA03805 genomic context (Gviz / IGV.js)
genomic context
Family sprG/sprF
Organism Staphylococcus aureus aureus N315 DNA
Taxonomy Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; Staphylococcus; Staphylococcus aureus subsp. aureus N315
Genomic location chromosome
Genomic coordinates 1006183-1006481
Genome accession (GenBank) NC_002745.2
Genome map CGView
Genomic context IGV.js
Upstream gene SA_RS05015 : CPBP family glutamic-type intramembrane protease
Within-locus gene SA_RS15370 : hypothetical protein
Downstream gene SA_RS05025 : hypothetical protein

Toxin mRNA

Name sprG2 predicted 2D structure (mfold / VARNA)
mRNA structure
Locus_tag
Genomic coordinates 1006183-1006423 (strand +)
Length 241 nt
Sequence
(with 50 nt upstream, and -10 box in red; mRNA/asRNA interaction region underlined; toxin ORF in blue; transcript sequence in UPPERCASE)
gtttttattactaaatattttataaaaatagtataatattttgtgggcaa
GTTGAATTGATGGTGGCTATCTGAGTAAAGGGGGGTGGTACCTATGGCAT
TACTTAACACTTTTGAAAGGAAAAGCCTATTGTGATATCTATTGCAAACG
CATTACATTTAATGTTAAGTTTCGGTATGTTTATCGTCACTTTCATTGGT
ATAGTAGTAGCAATAATAAATTTAAGCAATAAAAAATAACCATCATTTCA
AAACTTTGACATAGAATGATGGTTAAAGAAAATCTCATTTA
→ BLAST sequence
Predicted 2D structure PDF, PNG

Antitoxin asRNA

Name sprF2 predicted 2D structure (mfold / VARNA)
sRNA structure
Locus_tag
Genomic coordinates 1006366-1006481 (strand -)
Length 116 nt
Sequence
(with 50 nt upstream, and -10 box in red; mRNA/asRNA interaction region underlined; transcript sequence in UPPERCASE)
acatctaataaaaatagacaattaaataaaagatatgttactataaaaat
GTAAAAAGACGACATGCAGGAACATGTCGCCTAATGAGCCCGTTAAAAAG
ACGGTGACTAAATGAGATTTTCTTTAACCATCATTCTATGTCAAAGTTTT
GAAATGATGGTTATTT
→ BLAST sequence
Predicted 2D structure PDF, PNG

Toxin Peptide

Name sprG2 predicted 2D structure (PSIPRED / POLYVIEW-2D)
peptide structurepeptide structure legend

hydrophobicity plot (ProtScale)
peptide hydrophobicity
Locus_tag
ORF genomic coordinates 1006294-1006371 (strand +)
ORF length (peptide length) 78 nt (25 aa)
ORF sequence
ATGTTAAGTTTCGGTATGTTTATCGTCACTTTCATTGGTATAGTAGTAGC
AATAATAAATTTAAGCAATAAAAAATAA
→ BLAST sequence
Peptide sequence
MLSFGMFIVTFIGIVVAIINLSNKK*
→ BLAST sequence
Predicted 2D structure PDF, GIF
Hydrophobicity plot PDF, GIF