Locus TA03804
Locus
| ID | TA03804 |
genomic context (Gviz / IGV.js)
|
| Family | sprG/sprF | |
| Organism | Staphylococcus aureus aureus N315 DNA | |
| Taxonomy | Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; Staphylococcus; Staphylococcus aureus subsp. aureus N315 | |
| Genomic location | chromosome | |
| Genomic coordinates | 2010870-2011315 | |
| Genome accession (GenBank) | NC_002745.2 | |
| Genome map | CGView | |
| Genomic context | IGV.js | |
| Upstream gene | SA_RS10115 : hypothetical protein | |
| Within-locus gene | SA_RS14820 : type I toxin-antitoxin system toxin PepG1 | |
| Downstream gene | sep : staphylococcal enterotoxin type P |
Toxin mRNA
| Name | sprG1 |
predicted 2D structure (mfold / VARNA)
|
| Locus_tag | ||
| Genomic coordinates | 2010877-2011315 (strand -) | |
| Length | 439 nt | |
| Sequence (with 50 nt upstream, and -10 box in red; mRNA/asRNA interaction region underlined; toxin ORF in blue; transcript sequence in UPPERCASE) |
gaaaaaatttaaaatctataaaaagtaccataagttattttattactata
→ BLAST sequence
CTTAAAACATTCACTTTTTTACTGCTGTTTGTAAGTTTTATAAAAAATTT CTATAGATAGTTTTGAACAAAGCGAGAATAATCTGAAAGTATACAAGCAG TAAAAAAAGTATATGTGCTATAATATGCTTTGAGCAAGTTGGATAGATGG TGGCTATCTGAGTATAAGGAGGTGGTGCCTATGGTGGCATTACTGAAATC TTTAGAAAGGAGACGCCTAATGATTACAATTAGTACCATGTTGCAGTTTG GTTTATTCCTTATTGCATTGATAGGTCTAGTAATCAAGCTTATTGAATTA AGCAATAAAAAATAACCATCGCTAACTTTGGCTGGTTTCGATGGTTAAAT GGTTATTAATTTAATCTTTAATCTAAAATAGCCACCGTCTTTTTAACGGG CTCACTAGGGTAACATGTTTGCGCATGTTGCCCTTTTTC |
|
| Predicted 2D structure | PDF, PNG |
Antitoxin asRNA
| Name | sprF1 |
predicted 2D structure (mfold / VARNA)
|
| Locus_tag | ||
| Genomic coordinates | 2010870-2011011 (strand +) | |
| Length | 142 nt | |
| Sequence (with 50 nt upstream, and -10 box in red; mRNA/asRNA interaction region underlined; transcript sequence in UPPERCASE) |
gacgactaataagccgtctatttgatatttatattatggtgtgttaattt
→ BLAST sequence
ATATATAGAAAAAGGGCAACATGCGCAAACATGTTACCCTAGTGAGCCCG TTAAAAAGACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTT AACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTAT |
|
| Predicted 2D structure | PDF, PNG |
Toxin Peptide
| Name | sprG1 |
predicted 2D structure (PSIPRED / POLYVIEW-2D)
 
hydrophobicity plot (ProtScale) 
|
| Locus_tag | ||
| ORF genomic coordinates | 2011001-2011135 (strand -) | |
| ORF length (peptide length) | 135 nt (44 aa) | |
| ORF sequence |
ATGGTGGCATTACTGAAATCTTTAGAAAGGAGACGCCTAATGATTACAAT
→ BLAST sequence
TAGTACCATGTTGCAGTTTGGTTTATTCCTTATTGCATTGATAGGTCTAG TAATCAAGCTTATTGAATTAAGCAATAAAAAATAA |
|
| Peptide sequence |
MVALLKSLERRRLMITISTMLQFGLFLIALIGLVIKLIELSNKK*
→ BLAST sequence
|
|
| Predicted 2D structure | PDF, GIF | |
| Hydrophobicity plot | PDF, GIF |
