Locus TA00126

Locus

ID TA00126 genomic context (Gviz / IGV.js)
genomic context
Family AapA/IsoA
Organism Helicobacter pylori 26695 chromosome
Taxonomy Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; Helicobacter pylori 26695
Genomic location chromosome
Genomic coordinates 1503082-1503303
Genome accession (GenBank) NC_000915.1
Genome map CGView
Genomic context IGV.js
Upstream gene ksgA : rRNA small subunit methyltransferase A
Downstream gene HP1433 : hypothetical protein

Toxin mRNA

Name AapA3 predicted 2D structure (mfold / VARNA)
mRNA structure
Locus_tag
Genomic coordinates 1503082-1503303 (strand +)
Length 222 nt
Sequence
(with 50 nt upstream, and -10 box in red; mRNA/asRNA interaction region underlined; toxin ORF in blue; transcript sequence in UPPERCASE)
ttgatgcggtctaggggtgttttaagggggtttgttgtaggatttcatca
CGCCCCATAGTTGCAATATGGGGCAAATCCTATGTCAAAAGGAGCATGCC
ATGAAACACAAAAGTGGCAAACGCTCTTGGAAAACATTATACTTTGAGTT
TGCTTTTTTGGGGCTTAAAGTGATCGTTTCTGTGAAACGCTGATTTTTCT
AAGAGCGTTCCCTTAAGCTTTTAAGCTTAGGGGTTTCCTTATGAAGCGGG
TTTGTCCTTGACTTTTGGGGCG
→ BLAST sequence
Predicted 2D structure PDF, PNG

Antitoxin asRNA

Name IsoA3 predicted 2D structure (mfold / VARNA)
sRNA structure
Locus_tag
Genomic coordinates 1503082-1503160 (strand -)
Length 79 nt
Sequence
(with 50 nt upstream, and -10 box in red; transcript sequence in UPPERCASE)
aaacgatcactttaagccccaaaaaagcaaactcaaagtataatgttttc
CAAGAGCGTTTGCCACTTTTGTGTTTCATGGCATGCTCCTTTTGACATAG
GATTTGCCCCATATTGCAACTATGGGGCG
→ BLAST sequence
Predicted 2D structure PDF, PNG

Toxin Peptide

Name AapA3-1 predicted 2D structure (PSIPRED / POLYVIEW-2D)
peptide structurepeptide structure legend

hydrophobicity plot (ProtScale)
peptide hydrophobicity
Locus_tag
ORF genomic coordinates 1503132-1503224 (strand +)
ORF length (peptide length) 93 nt (30 aa)
ORF sequence
ATGAAACACAAAAGTGGCAAACGCTCTTGGAAAACATTATACTTTGAGTT
TGCTTTTTTGGGGCTTAAAGTGATCGTTTCTGTGAAACGCTGA
→ BLAST sequence
Peptide sequence
MKHKSGKRSWKTLYFEFAFLGLKVIVSVKR*
→ BLAST sequence
Predicted 2D structure PDF, GIF
Hydrophobicity plot PDF, GIF