Locus TA00126
Locus
ID | TA00126 |
genomic context (Gviz / IGV.js)
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Family | AapA/IsoA | |
Organism | Helicobacter pylori 26695 chromosome | |
Taxonomy | Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; Helicobacter pylori 26695 | |
Genomic location | chromosome | |
Genomic coordinates | 1503082-1503303 | |
Genome accession (GenBank) | NC_000915.1 | |
Genome map | CGView | |
Genomic context | IGV.js | |
Upstream gene | hpnL : nickel-binding protein HpnL | |
Downstream gene | HP_RS07090 : hypothetical protein |
Toxin mRNA
Name | AapA3 |
predicted 2D structure (mfold / VARNA)
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Locus_tag | ||
Genomic coordinates | 1503082-1503303 (strand +) | |
Length | 222 nt | |
Sequence (with 50 nt upstream, and -10 box in red; mRNA/asRNA interaction region underlined; toxin ORF in blue; transcript sequence in UPPERCASE) |
ttgatgcggtctaggggtgttttaagggggtttgttgtaggatttcatca
→ BLAST sequence
CGCCCCATAGTTGCAATATGGGGCAAATCCTATGTCAAAAGGAGCATGCC ATGAAACACAAAAGTGGCAAACGCTCTTGGAAAACATTATACTTTGAGTT TGCTTTTTTGGGGCTTAAAGTGATCGTTTCTGTGAAACGCTGATTTTTCT AAGAGCGTTCCCTTAAGCTTTTAAGCTTAGGGGTTTCCTTATGAAGCGGG TTTGTCCTTGACTTTTGGGGCG |
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Predicted 2D structure | PDF, PNG |
Antitoxin asRNA
Name | IsoA3 |
predicted 2D structure (mfold / VARNA)
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Locus_tag | ||
Genomic coordinates | 1503082-1503160 (strand -) | |
Length | 79 nt | |
Sequence (with 50 nt upstream, and -10 box in red; transcript sequence in UPPERCASE) |
aaacgatcactttaagccccaaaaaagcaaactcaaagtataatgttttc
→ BLAST sequence
CAAGAGCGTTTGCCACTTTTGTGTTTCATGGCATGCTCCTTTTGACATAG GATTTGCCCCATATTGCAACTATGGGGCG |
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Predicted 2D structure | PDF, PNG |
Toxin Peptide
Name | AapA3-1 |
predicted 2D structure (PSIPRED / POLYVIEW-2D)
![]() ![]() hydrophobicity plot (ProtScale) ![]() |
Locus_tag | ||
ORF genomic coordinates | 1503132-1503224 (strand +) | |
ORF length (peptide length) | 93 nt (30 aa) | |
ORF sequence |
ATGAAACACAAAAGTGGCAAACGCTCTTGGAAAACATTATACTTTGAGTT
→ BLAST sequence
TGCTTTTTTGGGGCTTAAAGTGATCGTTTCTGTGAAACGCTGA |
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Peptide sequence |
MKHKSGKRSWKTLYFEFAFLGLKVIVSVKR*
→ BLAST sequence
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Predicted 2D structure | PDF, GIF | |
Hydrophobicity plot | PDF, GIF |