Locus TA00125

Locus

ID TA00125 genomic context (Gviz / IGV.js)
genomic context
Family AapA/IsoA
Organism Helicobacter pylori 26695 chromosome
Taxonomy Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; Helicobacter pylori 26695
Genomic location chromosome
Genomic coordinates 1245705-1245954
Genome accession (GenBank) NC_000915.1
Genome map CGView
Genomic context IGV.js
Upstream gene hopQ : Hop family adhesin HopQ
Downstream gene deoD : purine-nucleoside phosphorylase

Toxin mRNA

Name AapA1 predicted 2D structure (mfold / VARNA)
mRNA structure
Locus_tag
Genomic coordinates 1245705-1245954 (strand +)
Length 250 nt
Sequence
(with 50 nt upstream, and -10 box in red; mRNA/asRNA interaction region underlined; toxin ORF in blue; transcript sequence in UPPERCASE)
ttttatttaattgggatttggtttttagaaagattgttgtaaaataaaca
CCCCCATAAGTGCAATTATGGGGATAAATCCATAAAAGGAGTTTGTCATG
GCTACCAAACATGGCAAAAACTCTTGGAAAACATTATACCTCAAAATTTC
ATTTTTGGGGTGTAAAGTTGTTGTTTTATTGAAGCGGTAGTTTTGTCAAA
CGAAATTTCTGTAAAATGATAGCTTTAGTTTTTCCAAAGTTCCCTTAAGG
CTTTTAGCTTTAAGGGTTTTCCTTTAAATTTTATCCTTAACTTATGGGGG
→ BLAST sequence
Predicted 2D structure PDF, PNG

Antitoxin asRNA

Name IsoA1 predicted 2D structure (mfold / VARNA)
sRNA structure
Locus_tag
Genomic coordinates 1245705-1245780 (strand -)
Length 76 nt
Sequence
(with 50 nt upstream, and -10 box in red; transcript sequence in UPPERCASE)
aaacaacaactttacaccccaaaaatgaaattttgaggtataatgttttc
CAAGAGTTTTTGCCATGTTTGGTAGCCATGACAAACTCCTTTTATGGATT
TATCCCCATAATTGCACTTATGGGGG
→ BLAST sequence
Predicted 2D structure PDF, PNG

Toxin Peptide

Name AapA1-1 predicted 2D structure (PSIPRED / POLYVIEW-2D)
peptide structurepeptide structure legend

hydrophobicity plot (ProtScale)
peptide hydrophobicity
Locus_tag
ORF genomic coordinates 1245752-1245844 (strand +)
ORF length (peptide length) 93 nt (30 aa)
ORF sequence
ATGGCTACCAAACATGGCAAAAACTCTTGGAAAACATTATACCTCAAAAT
TTCATTTTTGGGGTGTAAAGTTGTTGTTTTATTGAAGCGGTAG
→ BLAST sequence
Peptide sequence
MATKHGKNSWKTLYLKISFLGCKVVVLLKR*
→ BLAST sequence
Predicted 2D structure PDF, GIF
Hydrophobicity plot PDF, GIF